Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   AEI26_RS03195 Genome accession   NZ_CP012212
Coordinates   605340..605777 (+) Length   145 a.a.
NCBI ID   WP_070298743.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 600340..610777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS03175 (AEI26_03145) kdpD 600828..602759 (+) 1932 WP_070298741.1 sensor histidine kinase KdpD -
  AEI26_RS03180 (AEI26_03150) uvrB 602754..604727 (-) 1974 WP_070298742.1 excinuclease ABC subunit UvrB -
  AEI26_RS03185 (AEI26_03155) - 604881..605111 (+) 231 WP_002852327.1 hypothetical protein -
  AEI26_RS03190 (AEI26_03160) - 605101..605343 (+) 243 WP_002854947.1 hypothetical protein -
  AEI26_RS03195 (AEI26_03165) Cj0683 605340..605777 (+) 438 WP_070298743.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AEI26_RS03200 (AEI26_03170) priA 605759..607612 (+) 1854 WP_079861419.1 primosomal protein N' -
  AEI26_RS03205 (AEI26_03175) cipA 607622..609016 (-) 1395 Protein_623 DUF2972 domain-containing protein -
  AEI26_RS03210 (AEI26_03180) ispG 609162..610235 (+) 1074 WP_044780527.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16737.71 Da        Isoelectric Point: 8.0993

>NTDB_id=152318 AEI26_RS03195 WP_070298743.1 605340..605777(+) (Cj0683) [Campylobacter jejuni strain CJ017CCUA]
MNKAFTLLELVFVILILGILSSLSLSFVNTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFVYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=152318 AEI26_RS03195 WP_070298743.1 605340..605777(+) (Cj0683) [Campylobacter jejuni strain CJ017CCUA]
ATGAATAAAGCTTTTACTTTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TGTCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCCAAAGAGATGGTTGAATTTGTTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.621

100

0.986

Multiple sequence alignment