Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WM90_RS23635 Genome accession   NZ_CP015159
Coordinates   4756424..4756900 (+) Length   158 a.a.
NCBI ID   WP_042962214.1    Uniprot ID   -
Organism   Escherichia coli strain Eco889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4751424..4761900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM90_RS23610 (WM90_23620) - 4751591..4754107 (+) 2517 WP_001545737.1 hypothetical protein -
  WM90_RS23615 (WM90_23625) - 4754183..4754638 (+) 456 WP_001545736.1 IrmA family protein -
  WM90_RS23620 (WM90_23630) - 4754717..4754950 (+) 234 WP_001119729.1 DUF905 family protein -
  WM90_RS23625 (WM90_23635) - 4755050..4755868 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  WM90_RS23630 (WM90_23640) - 4755923..4756408 (+) 486 WP_000849588.1 antirestriction protein -
  WM90_RS23635 (WM90_23645) radC 4756424..4756900 (+) 477 WP_042962214.1 RadC family protein Machinery gene
  WM90_RS23640 (WM90_23650) - 4756969..4757190 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  WM90_RS23645 (WM90_23655) - 4757209..4757853 (+) 645 WP_000086755.1 hypothetical protein -
  WM90_RS23650 (WM90_23660) - 4757903..4758283 (+) 381 WP_001546108.1 type IV toxin-antitoxin system YeeU family antitoxin -
  WM90_RS23655 (WM90_23665) - 4758360..4758737 (+) 378 WP_001546109.1 TA system toxin CbtA family protein -
  WM90_RS23660 (WM90_23670) - 4758734..4759221 (+) 488 Protein_4549 DUF5983 family protein -
  WM90_RS23665 (WM90_23675) - 4759238..4759435 (+) 198 WP_000839260.1 DUF957 domain-containing protein -
  WM90_RS23670 (WM90_23680) - 4759520..4760365 (+) 846 WP_001280441.1 DUF4942 domain-containing protein -
  WM90_RS23675 (WM90_23685) - 4760434..4760829 (+) 396 WP_000208383.1 DUF6088 family protein -
  WM90_RS23680 (WM90_23690) - 4760822..4761756 (+) 935 Protein_4553 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17653.25 Da        Isoelectric Point: 6.9859

>NTDB_id=152187 WM90_RS23635 WP_042962214.1 4756424..4756900(+) (radC) [Escherichia coli strain Eco889]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPGKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=152187 WM90_RS23635 WP_042962214.1 4756424..4756900(+) (radC) [Escherichia coli strain Eco889]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCTGGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386