Detailed information NTG0152183

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WM90_RS22105
• Genome accession: NZ_CP015159
• Coordinates: 4429589..4430581 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Eco889
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4424589..4435581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WM90_RS22085 (WM90_22090)	ygbM	4425227..4426003 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
WM90_RS22090 (WM90_22095)	ygbN	4426092..4427456 (+)	1365	WP_000104433.1	GntP family transporter	-
WM90_RS22095 (WM90_22100)	-	4427599..4428642 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
WM90_RS22100 (WM90_22105)	-	4428867..4429418 (+)	552	WP_001179444.1	flavodoxin family protein	-
WM90_RS22105 (WM90_22110)	rpoS	4429589..4430581 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
WM90_RS22110 (WM90_22115)	nlpD	4430644..4431738 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
WM90_RS22115 (WM90_22120)	pcm	4431923..4432549 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
WM90_RS22120 (WM90_22125)	surE	4432543..4433304 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
WM90_RS22125 (WM90_22130)	truD	4433285..4434334 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
WM90_RS22130 (WM90_22135)	ispF	4434331..4434810 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WM90_RS22135 (WM90_22140)	ispD	4434810..4435520 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=152183 WM90_RS22105 WP_000081550.1 4429589..4430581(-) (rpoS) [Escherichia coli strain Eco889]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=152183 WM90_RS22105 WP_000081550.1 4429589..4430581(-) (rpoS) [Escherichia coli strain Eco889]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTATCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715