Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   WM90_RS21805 Genome accession   NZ_CP015159
Coordinates   4377459..4377974 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain Eco889     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4372459..4382974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM90_RS21785 (WM90_21790) emrA 4372607..4373779 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  WM90_RS21790 (WM90_21795) emrB 4373796..4375334 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  WM90_RS21795 (WM90_21800) - 4375592..4376299 (+) 708 WP_001097132.1 RNA ligase family protein -
  WM90_RS21800 (WM90_21805) - 4376296..4377408 (+) 1113 WP_001546074.1 ATP-binding protein -
  WM90_RS21805 (WM90_21810) luxS 4377459..4377974 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  WM90_RS21810 (WM90_21815) gshA 4378124..4379680 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  WM90_RS21815 (WM90_21820) yqaA 4379753..4380181 (-) 429 WP_001287462.1 YqaA family protein -
  WM90_RS21820 (WM90_21825) yqaB 4380178..4380744 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  WM90_RS21850 (WM90_21855) csrA 4381933..4382118 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=152180 WM90_RS21805 WP_001130208.1 4377459..4377974(-) (luxS) [Escherichia coli strain Eco889]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=152180 WM90_RS21805 WP_001130208.1 4377459..4377974(-) (luxS) [Escherichia coli strain Eco889]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737