Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SGRAN_RS18295 Genome accession   NZ_CP012199
Coordinates   3986405..3987766 (-) Length   453 a.a.
NCBI ID   WP_067186013.1    Uniprot ID   A0AA86L4G9
Organism   Sphingopyxis granuli strain TFA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3981405..3992766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGRAN_RS18270 (SGRAN_3637) - 3981567..3982130 (+) 564 WP_067187173.1 shikimate kinase -
  SGRAN_RS18275 (SGRAN_3638) aroB 3982118..3983221 (+) 1104 WP_067186007.1 3-dehydroquinate synthase -
  SGRAN_RS18280 (SGRAN_3639) - 3983382..3985268 (-) 1887 WP_067186009.1 cation:proton antiporter -
  SGRAN_RS18285 (SGRAN_3640) - 3985265..3985690 (-) 426 WP_067186011.1 iron-sulfur cluster assembly scaffold protein -
  SGRAN_RS18290 (SGRAN_3641) - 3985687..3986262 (-) 576 WP_067186012.1 CvpA family protein -
  SGRAN_RS18295 (SGRAN_3642) radA 3986405..3987766 (-) 1362 WP_067186013.1 DNA repair protein RadA Machinery gene
  SGRAN_RS18300 (SGRAN_3643) fsa 3987977..3988627 (+) 651 WP_067186014.1 fructose-6-phosphate aldolase -
  SGRAN_RS18305 (SGRAN_3644) - 3988996..3989799 (+) 804 WP_067186015.1 enoyl-CoA hydratase-related protein -
  SGRAN_RS18310 (SGRAN_3645) - 3989801..3991303 (+) 1503 WP_067186019.1 acetyl-CoA acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47429.26 Da        Isoelectric Point: 6.2631

>NTDB_id=152157 SGRAN_RS18295 WP_067186013.1 3986405..3987766(-) (radA) [Sphingopyxis granuli strain TFA]
MAKAKRQYVCQNCGAVSYRWQGQCADCGEWNTLVEEAAETVFSAKHDLSKGGRTLALETLDEQSAMPERMLCGIAEFDRA
LGGGFVAGSATLIGGDPGIGKSTLLLQAAGRIARAGKSVVYISGEEAAAQVRLRAQRLGLGDAPVALASATSVRDILATL
EGRGADFVVIDSIQTMHSDLIDSAPGTVSQVRASAQELIRYAKDSGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
RSHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVANPSSLFLTDRSRDVPGSVVFPALEGTRPVLVEVQALTVRLASGAT
PRRAVVGWDSGRLAMVLAVLEARCGLQMGSAEVYLNIAGGYRLTDPAADLAVAAALISAFSERPVPADAIVFGELSLSGE
VRPVAHDALRLREAAKLGFSSGWGPKGMKGVKGIGVTGFGRLGELVDLMLGRA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=152157 SGRAN_RS18295 WP_067186013.1 3986405..3987766(-) (radA) [Sphingopyxis granuli strain TFA]
ATGGCCAAAGCGAAACGCCAATATGTCTGCCAGAATTGCGGCGCCGTCAGCTATCGCTGGCAGGGCCAGTGCGCCGATTG
CGGCGAGTGGAACACGCTGGTCGAGGAAGCGGCCGAAACGGTCTTTTCCGCGAAGCACGACCTGTCGAAGGGCGGCCGCA
CGCTCGCGCTCGAAACGCTCGACGAACAGAGTGCGATGCCCGAGCGGATGCTGTGCGGCATCGCCGAGTTCGACCGCGCG
CTCGGCGGCGGCTTCGTCGCCGGGTCGGCGACGCTGATCGGCGGCGATCCGGGGATCGGCAAATCGACCTTGCTGCTTCA
GGCCGCGGGCCGGATCGCCAGGGCGGGCAAGTCGGTCGTCTATATCAGCGGCGAGGAAGCGGCGGCGCAGGTGCGGCTGC
GCGCGCAGCGGCTGGGGCTCGGCGACGCGCCGGTGGCACTGGCGAGCGCGACTTCGGTGCGCGACATCCTCGCGACGCTG
GAGGGGCGCGGCGCCGATTTCGTCGTCATCGATTCGATCCAGACGATGCACAGCGACCTGATCGACAGCGCGCCGGGCAC
CGTCAGCCAGGTGCGCGCGAGCGCGCAGGAACTGATCCGCTATGCCAAGGACAGCGGCGCGGCGATCGTGCTCGTCGGCC
ATGTGACGAAGGACGGAACGATCGCGGGACCGCGCGTGCTCGAACATATGGTCGACACCGTGCTGGCGTTCGAGGGCGAG
CGCAGCCACCAGTATCGCATCCTGCGCGCGGTCAAGAACCGCTTCGGCGGCACCGACGAGATCGGGGTGTTCGCGATGGG
CGAGGAGGGGCTGGGCGAGGTCGCCAACCCGTCGAGCCTGTTCCTGACCGACCGCAGCCGCGACGTGCCGGGGTCGGTGG
TGTTCCCCGCGCTGGAGGGCACGCGGCCGGTGCTGGTCGAGGTGCAGGCGCTGACCGTCCGCCTTGCGAGCGGCGCGACG
CCGCGCCGCGCCGTCGTCGGCTGGGACAGCGGGCGGCTCGCGATGGTGCTCGCGGTGCTCGAGGCGCGCTGCGGGCTCCA
GATGGGGAGCGCCGAAGTCTATCTGAACATCGCGGGCGGCTATCGCCTCACCGATCCGGCGGCCGACCTCGCGGTGGCGG
CGGCGCTGATCTCTGCGTTCAGCGAGCGGCCGGTGCCCGCCGATGCGATCGTCTTCGGCGAACTGTCGCTGTCGGGCGAG
GTGCGTCCGGTCGCGCACGACGCGCTGCGCCTGCGCGAGGCGGCGAAGCTCGGCTTTTCAAGCGGCTGGGGGCCAAAGGG
GATGAAGGGTGTGAAGGGGATCGGCGTCACCGGCTTCGGCCGGCTCGGCGAACTCGTTGACCTGATGCTCGGGCGTGCCT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-419)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.629

100

0.488
  radA Streptococcus pneumoniae Rx1

47.072

98.013

0.461
  radA Streptococcus pneumoniae D39

47.072

98.013

0.461
  radA Streptococcus pneumoniae TIGR4

47.072

98.013

0.461
  radA Streptococcus pneumoniae R6

47.072

98.013

0.461
  radA Streptococcus mitis NCTC 12261

46.444

99.338

0.461
  radA Streptococcus mitis SK321

47.775

94.26

0.45

Multiple sequence alignment