Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CGRAC_RS04390 Genome accession   NZ_CP012196
Coordinates   845313..845705 (+) Length   130 a.a.
NCBI ID   WP_005871972.1    Uniprot ID   C8PJC5
Organism   Campylobacter gracilis strain ATCC 33236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 840313..850705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGRAC_RS04370 (CGRAC_0854) proC 840366..841322 (-) 957 WP_005871979.1 pyrroline-5-carboxylate reductase -
  CGRAC_RS04375 (CGRAC_0855) ilvC 841461..842483 (+) 1023 WP_005871978.1 ketol-acid reductoisomerase -
  CGRAC_RS04380 (CGRAC_0856) - 842497..843702 (+) 1206 WP_005871977.1 divergent polysaccharide deacetylase family protein -
  CGRAC_RS04385 (CGRAC_0857) - 843686..844474 (+) 789 WP_005871976.1 DNA-processing protein DprA -
  CGRAC_RS11830 - 844974..845186 (+) 213 WP_143297846.1 hypothetical protein -
  CGRAC_RS04390 (CGRAC_0858) dprB 845313..845705 (+) 393 WP_005871972.1 Holliday junction resolvase RuvX Machinery gene
  CGRAC_RS04395 (CGRAC_0859) - 846168..846536 (+) 369 WP_005871970.1 EthD domain-containing protein -
  CGRAC_RS04405 (CGRAC_0861) - 847313..847999 (+) 687 WP_050346315.1 tetratricopeptide repeat protein -
  CGRAC_RS04410 (CGRAC_0862) - 848640..850022 (-) 1383 WP_005871958.1 FAD-linked oxidase C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14033.13 Da        Isoelectric Point: 6.9589

>NTDB_id=152146 CGRAC_RS04390 WP_005871972.1 845313..845705(+) (dprB) [Campylobacter gracilis strain ATCC 33236]
MIVAIDLGLKRIGVAAAPDDKTPLPCEPILRKNRTQAARELSELLREKGASVLVLGVPRGGASEEEMSRRIRHFASLLDF
DGEIKFQDESFSSAEAAEFASKCAKGGGKDPRFDSIAATIILQRFLASMG

Nucleotide


Download         Length: 393 bp        

>NTDB_id=152146 CGRAC_RS04390 WP_005871972.1 845313..845705(+) (dprB) [Campylobacter gracilis strain ATCC 33236]
TTGATAGTTGCGATCGATCTTGGGCTTAAGCGTATCGGCGTGGCAGCGGCACCGGATGATAAGACGCCGCTTCCGTGCGA
GCCGATCCTGCGCAAAAACCGCACCCAAGCCGCGCGCGAGCTAAGCGAACTGCTGCGCGAAAAGGGTGCCAGCGTGCTAG
TGCTGGGCGTGCCGCGCGGCGGGGCGAGCGAGGAGGAGATGAGCAGGCGCATACGCCACTTCGCCTCGCTGCTGGATTTT
GACGGCGAGATAAAATTTCAAGATGAGAGCTTTTCGAGCGCCGAAGCGGCGGAGTTTGCGAGTAAATGCGCTAAGGGCGG
CGGCAAGGATCCGCGCTTTGATAGCATCGCCGCGACGATAATTTTGCAGAGGTTTTTGGCGAGCATGGGCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C8PJC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.837

99.231

0.485

Multiple sequence alignment