Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WM90_RS07095 Genome accession   NZ_CP015159
Coordinates   1440040..1440516 (+) Length   158 a.a.
NCBI ID   WP_001186779.1    Uniprot ID   -
Organism   Escherichia coli strain Eco889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435040..1445516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM90_RS07070 (WM90_07070) - 1436115..1438016 (+) 1902 Protein_1334 Ag43/Cah family autotransporter adhesin -
  WM90_RS07075 (WM90_07075) - 1438087..1438282 (+) 196 Protein_1335 DUF905 family protein -
  WM90_RS07080 (WM90_07080) - 1438400..1439218 (+) 819 WP_001234712.1 DUF932 domain-containing protein -
  WM90_RS07090 (WM90_07090) - 1439560..1440024 (+) 465 WP_000855061.1 antirestriction protein -
  WM90_RS07095 (WM90_07095) radC 1440040..1440516 (+) 477 WP_001186779.1 JAB domain-containing protein Machinery gene
  WM90_RS07100 (WM90_07100) - 1440579..1440800 (+) 222 WP_001220314.1 DUF987 domain-containing protein -
  WM90_RS07110 (WM90_07110) - 1440963..1441331 (+) 369 WP_001280950.1 type IV toxin-antitoxin system YeeU family antitoxin -
  WM90_RS07115 (WM90_07115) - 1441420..1441797 (+) 378 WP_000854770.1 TA system toxin CbtA family protein -
  WM90_RS07120 (WM90_07120) - 1441794..1442282 (+) 489 WP_000761690.1 DUF5983 family protein -
  WM90_RS07125 (WM90_07125) - 1442299..1442475 (+) 177 WP_000839286.1 DUF957 domain-containing protein -
  WM90_RS30315 - 1442581..1442730 (+) 150 Protein_1344 hypothetical protein -
  WM90_RS31280 - 1442721..1442834 (+) 114 Protein_1345 transcriptional regulator -
  WM90_RS31285 (WM90_07130) - 1443097..1443402 (+) 306 Protein_1346 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17635.23 Da        Isoelectric Point: 7.2523

>NTDB_id=152142 WM90_RS07095 WP_001186779.1 1440040..1440516(+) (radC) [Escherichia coli strain Eco889]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLLLNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=152142 WM90_RS07095 WP_001186779.1 1440040..1440516(+) (radC) [Escherichia coli strain Eco889]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGCTTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment