Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WM90_RS06100 Genome accession   NZ_CP015159
Coordinates   1244163..1244639 (-) Length   158 a.a.
NCBI ID   WP_001545734.1    Uniprot ID   -
Organism   Escherichia coli strain Eco889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1239163..1249639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM90_RS06050 (WM90_06050) ulaC 1239310..1239774 (+) 465 WP_000776505.1 PTS ascorbate transporter subunit IIA -
  WM90_RS06055 (WM90_06055) ulaD 1239788..1240438 (+) 651 WP_000056749.1 3-keto-L-gulonate-6-phosphate decarboxylase UlaD -
  WM90_RS06065 (WM90_06065) - 1240710..1241557 (-) 848 Protein_1144 DUF4942 domain-containing protein -
  WM90_RS06070 (WM90_06070) - 1241642..1241830 (-) 189 WP_001545730.1 DUF957 domain-containing protein -
  WM90_RS06075 (WM90_06075) - 1241847..1242335 (-) 489 WP_000761698.1 DUF5983 family protein -
  WM90_RS06080 (WM90_06080) - 1242332..1242709 (-) 378 WP_001545731.1 TA system toxin CbtA family protein -
  WM90_RS06085 (WM90_06085) - 1242786..1243166 (-) 381 WP_001545732.1 type IV toxin-antitoxin system YeeU family antitoxin -
  WM90_RS06090 (WM90_06090) - 1243216..1243860 (-) 645 WP_001545733.1 hypothetical protein -
  WM90_RS06095 (WM90_06095) - 1243879..1244100 (-) 222 WP_000692353.1 DUF987 domain-containing protein -
  WM90_RS06100 (WM90_06100) radC 1244163..1244639 (-) 477 WP_001545734.1 RadC family protein Machinery gene
  WM90_RS06105 (WM90_06105) - 1244655..1245140 (-) 486 WP_000849588.1 antirestriction protein -
  WM90_RS06110 (WM90_06110) - 1245195..1246013 (-) 819 WP_001545735.1 DUF932 domain-containing protein -
  WM90_RS30895 - 1246191..1246322 (-) 132 WP_042107502.1 DUF905 family protein -
  WM90_RS06120 (WM90_06120) - 1246423..1246878 (-) 456 WP_001545736.1 IrmA family protein -
  WM90_RS06125 (WM90_06125) - 1246954..1249470 (-) 2517 WP_001545737.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17631.24 Da        Isoelectric Point: 7.2020

>NTDB_id=152141 WM90_RS06100 WP_001545734.1 1244163..1244639(-) (radC) [Escherichia coli strain Eco889]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPGKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=152141 WM90_RS06100 WP_001545734.1 1244163..1244639(-) (radC) [Escherichia coli strain Eco889]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCTGGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392