Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CUREO_RS05700 Genome accession   NZ_CP012195
Coordinates   1147441..1148781 (+) Length   446 a.a.
NCBI ID   WP_050335290.1    Uniprot ID   A0AAU8UA55
Organism   Campylobacter ureolyticus RIGS 9880     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142441..1153781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUREO_RS05670 (CUREO_1140) - 1142657..1143223 (-) 567 WP_050335282.1 DedA family protein -
  CUREO_RS05675 (CUREO_1141) - 1143223..1143813 (-) 591 WP_050335284.1 lipid-binding SYLF domain-containing protein -
  CUREO_RS05680 (CUREO_1142) rny 1143823..1145376 (-) 1554 WP_050335285.1 ribonuclease Y -
  CUREO_RS05685 (CUREO_1143) - 1145309..1145929 (-) 621 WP_050335286.1 5-formyltetrahydrofolate cyclo-ligase -
  CUREO_RS05690 (CUREO_1144) - 1145997..1146575 (+) 579 WP_050335288.1 TlpA family protein disulfide reductase -
  CUREO_RS05695 (CUREO_1145) ftsY 1146572..1147441 (+) 870 WP_024962131.1 signal recognition particle-docking protein FtsY -
  CUREO_RS05700 (CUREO_1146) radA 1147441..1148781 (+) 1341 WP_050335290.1 DNA repair protein RadA Machinery gene
  CUREO_RS05705 (CUREO_1147) - 1148828..1149892 (+) 1065 WP_050335292.1 diguanylate cyclase domain-containing protein -
  CUREO_RS05710 (CUREO_1148) - 1150061..1150498 (-) 438 WP_024962134.1 Dps family protein -
  CUREO_RS05715 (CUREO_1149) - 1150593..1151801 (-) 1209 WP_050335984.1 glucose-6-phosphate isomerase -
  CUREO_RS05720 (CUREO_1150) galU 1151788..1152636 (-) 849 WP_050335293.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49282.37 Da        Isoelectric Point: 7.9315

>NTDB_id=152134 CUREO_RS05700 WP_050335290.1 1147441..1148781(+) (radA) [Campylobacter ureolyticus RIGS 9880]
MAKKKTVFECSACGNKQAKWMGKCPECGAWDSFVELNEEQIKFIETSSKIITIPNKAQEICDIKIEDVKRVSTEDKELDL
VLGGGIVEGSLVLIGGSPGIGKSTLLLKIASNLAKKSLKVLYVSGEESLSQIKLRADRLNAVSKNLYLLAEISLENIKNE
LLQNEYKFLVIDSIQTLYSDAITSAPGSVSQVREITFELMRIAKEKGISVFIIGHITKEGSIAGPRVLEHMVDVVLYFEG
DASKELRVLRGFKNRFGSTSEVGIFEMSDKGLISAKDVTSKFFTRGSAISGSAITVIMEGSRPLIVEIQALVCESSYPKR
SSTGYDKNRLDMIIALLDRKMEILLGHYDVFINVIGGVKINETAADLAVVAAIVSSFKNRPISKESIFLGEVSLNGEIRD
ISNLDLRVKEAKMQNFRNVIAPSLPIEEKRIKVFQTKEIRQILDMM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=152134 CUREO_RS05700 WP_050335290.1 1147441..1148781(+) (radA) [Campylobacter ureolyticus RIGS 9880]
ATGGCTAAAAAAAAGACAGTTTTTGAATGTAGTGCATGCGGAAACAAACAAGCCAAATGGATGGGAAAATGTCCAGAATG
TGGTGCTTGGGATAGTTTTGTGGAGCTAAATGAAGAGCAGATTAAATTTATAGAAACTTCTTCAAAAATAATAACTATTC
CAAACAAAGCACAAGAAATTTGTGATATAAAAATAGAAGATGTTAAAAGAGTCTCAACAGAAGATAAAGAGCTTGATTTA
GTTTTAGGTGGTGGGATAGTAGAGGGCTCACTTGTGCTAATTGGTGGAAGTCCTGGGATTGGCAAATCAACGCTTTTGCT
AAAAATAGCTTCAAATTTGGCAAAAAAATCTTTAAAAGTCCTTTATGTAAGTGGAGAAGAAAGTCTTAGTCAAATAAAAC
TAAGAGCAGATAGGTTAAATGCTGTTTCAAAAAATTTATATCTTTTGGCTGAAATTTCACTTGAAAATATTAAAAATGAA
CTTTTACAAAATGAGTATAAATTTCTAGTTATAGATAGCATCCAAACACTTTATAGTGACGCTATAACCTCAGCCCCAGG
ATCTGTTTCACAAGTAAGAGAAATAACATTTGAGTTAATGCGAATAGCCAAAGAAAAAGGAATTTCTGTTTTTATCATAG
GTCACATCACAAAAGAAGGTTCAATTGCAGGTCCTAGAGTGCTTGAACACATGGTTGATGTGGTGCTTTACTTTGAAGGA
GATGCTAGCAAAGAGCTAAGAGTTTTAAGAGGATTTAAAAACCGTTTTGGCTCAACAAGTGAAGTTGGCATATTTGAAAT
GAGCGATAAAGGCTTAATAAGTGCAAAAGATGTAACAAGTAAATTTTTTACAAGAGGTTCTGCTATAAGTGGAAGTGCAA
TAACAGTTATAATGGAAGGTTCTCGCCCATTAATAGTAGAAATTCAAGCCCTAGTTTGTGAAAGTTCATATCCAAAAAGA
AGTTCAACTGGATATGATAAAAATAGACTTGATATGATAATAGCCTTGCTTGATAGAAAAATGGAAATTTTACTTGGACA
TTATGATGTTTTTATAAATGTAATTGGTGGTGTTAAGATAAATGAAACTGCTGCAGATTTAGCTGTAGTTGCGGCAATTG
TAAGCAGTTTTAAAAATCGCCCAATTAGCAAAGAAAGTATATTTTTAGGCGAAGTTAGCTTAAATGGTGAAATTCGTGAT
ATTTCAAACCTAGATCTTAGAGTAAAAGAAGCAAAAATGCAAAATTTTAGAAATGTCATAGCCCCATCTTTACCAATTGA
AGAAAAAAGGATAAAAGTATTTCAAACAAAAGAAATAAGGCAAATTTTAGATATGATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-220)

Subunit ChlI of Mg-chelatase (ChlI)

(351-422)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.348

96.637

0.487
  radA Streptococcus pneumoniae Rx1

46.389

100

0.475
  radA Streptococcus pneumoniae D39

46.389

100

0.475
  radA Streptococcus pneumoniae R6

46.389

100

0.475
  radA Streptococcus pneumoniae TIGR4

46.389

100

0.475
  radA Streptococcus mitis NCTC 12261

46.256

100

0.471
  radA Streptococcus mitis SK321

46.358

100

0.471

Multiple sequence alignment