Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CUREO_RS05490 Genome accession   NZ_CP012195
Coordinates   1109358..1110296 (+) Length   312 a.a.
NCBI ID   WP_050335235.1    Uniprot ID   A0AAU8U0U7
Organism   Campylobacter ureolyticus RIGS 9880     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104358..1115296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUREO_RS05470 (CUREO_1100) - 1104954..1105997 (-) 1044 WP_050335231.1 glycosyltransferase family 4 protein -
  CUREO_RS05475 (CUREO_1101) - 1105994..1106926 (-) 933 WP_050335982.1 glycosyltransferase family 9 protein -
  CUREO_RS05480 (CUREO_1102) - 1106968..1108263 (-) 1296 WP_050335232.1 O-antigen ligase family protein -
  CUREO_RS05485 (CUREO_1103) - 1108343..1109374 (+) 1032 WP_050335234.1 glycosyltransferase family 4 protein -
  CUREO_RS05490 (CUREO_1104) waaF 1109358..1110296 (+) 939 WP_050335235.1 lipopolysaccharide heptosyltransferase II Regulator
  CUREO_RS05495 (CUREO_1105) gmhA 1110283..1110852 (-) 570 WP_050335237.1 D-sedoheptulose 7-phosphate isomerase -
  CUREO_RS05500 (CUREO_1106) rfaE1 1110855..1112252 (-) 1398 WP_050335239.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CUREO_RS05505 (CUREO_1107) rfaD 1112242..1113222 (-) 981 WP_050335240.1 ADP-glyceromanno-heptose 6-epimerase -
  CUREO_RS05510 (CUREO_1108) gmhB 1113212..1113745 (-) 534 WP_050335241.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  CUREO_RS05515 (CUREO_1109) mnmE 1113781..1115115 (-) 1335 WP_050335242.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35480.60 Da        Isoelectric Point: 9.9604

>NTDB_id=152133 CUREO_RS05490 WP_050335235.1 1109358..1110296(+) (waaF) [Campylobacter ureolyticus RIGS 9880]
MKIFIELPTWLGDAVMSTLAIENITLNFPNAKITFFGSFASTSLFTNHPNLEKIIIDDSKKTKCRLFNLAKTFVNLPKFD
IAISFRSHFATKFGFLFLKANKKIIFNKNIKATHQAEKYEKFINDFLGIKAKNNKLKLYFKPNVFKKPTLGLNPGASYGS
AKRWYPEYFAEIGIALKDKYDIIIFGGKNEEKICNEISNILSENKINHKNLCAKTSIEELCQNIAGLSLFITNDSGPMHI
AASYKVPTIALFGPTKFNETSPYGNQKAKILHLNLDCMPCMKRECPLKTHECMKNLTPRMVIECINKNFNFS

Nucleotide


Download         Length: 939 bp        

>NTDB_id=152133 CUREO_RS05490 WP_050335235.1 1109358..1110296(+) (waaF) [Campylobacter ureolyticus RIGS 9880]
ATGAAAATATTTATTGAGCTTCCAACCTGGCTAGGTGATGCTGTAATGAGCACTTTAGCCATAGAAAATATAACCTTAAA
TTTCCCAAATGCAAAAATAACTTTTTTTGGCTCTTTTGCCTCAACTTCTCTTTTTACAAATCATCCAAACTTAGAAAAAA
TTATAATTGATGATAGTAAAAAAACTAAATGCAGACTTTTCAACTTAGCAAAAACTTTTGTAAATTTACCAAAATTTGAC
ATTGCAATAAGTTTTAGAAGTCATTTTGCAACAAAATTTGGCTTTTTATTTTTAAAAGCTAATAAAAAAATTATTTTTAA
TAAAAATATAAAAGCAACACATCAAGCTGAAAAATATGAAAAATTTATAAATGATTTTTTAGGAATAAAAGCAAAAAATA
ATAAATTAAAATTATATTTTAAGCCAAATGTTTTTAAAAAACCAACACTTGGACTAAATCCAGGAGCAAGCTATGGAAGT
GCTAAAAGATGGTATCCAGAGTATTTTGCAGAAATTGGGATTGCACTTAAAGATAAATATGATATTATAATTTTTGGAGG
AAAAAACGAAGAAAAAATATGTAACGAAATTTCTAATATTTTATCAGAGAATAAAATTAATCATAAAAATTTATGCGCAA
AGACATCTATTGAAGAGTTGTGCCAAAATATAGCTGGGCTTTCTTTATTTATTACAAATGACAGTGGTCCTATGCATATC
GCAGCTAGCTATAAAGTTCCTACGATAGCACTTTTTGGACCAACTAAATTTAATGAAACATCTCCTTATGGAAATCAAAA
GGCAAAAATACTACATTTAAATTTAGACTGTATGCCTTGTATGAAAAGAGAATGTCCTTTAAAAACTCATGAATGCATGA
AAAATCTAACCCCAAGAATGGTGATAGAATGTATAAATAAAAATTTTAATTTTTCATAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(99-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.282

100

0.513

Multiple sequence alignment