Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CUREO_RS04120 Genome accession   NZ_CP012195
Coordinates   836095..836481 (-) Length   128 a.a.
NCBI ID   WP_050334737.1    Uniprot ID   A0AAU8TZX1
Organism   Campylobacter ureolyticus RIGS 9880     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 831095..841481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUREO_RS08790 (CUREO_0816) - 831482..831868 (-) 387 WP_235436848.1 hypothetical protein -
  CUREO_RS04085 (CUREO_0817) - 831965..832675 (-) 711 WP_050334724.1 Fic family protein -
  CUREO_RS04090 (CUREO_0818) - 832672..833529 (-) 858 WP_050334725.1 Fic family protein -
  CUREO_RS04095 (CUREO_0819) - 833529..834188 (-) 660 WP_050334726.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  CUREO_RS04100 (CUREO_0820) - 834185..834454 (-) 270 WP_050334728.1 hypothetical protein -
  CUREO_RS04105 (CUREO_0821) - 834482..835294 (-) 813 WP_050334731.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  CUREO_RS04110 (CUREO_0822) - 835282..835605 (-) 324 WP_050334733.1 hypothetical protein -
  CUREO_RS04115 (CUREO_0823) - 835605..835997 (-) 393 WP_050334735.1 hypothetical protein -
  CUREO_RS04120 (CUREO_0824) dprB 836095..836481 (-) 387 WP_050334737.1 Holliday junction resolvase RuvX Machinery gene
  CUREO_RS04125 (CUREO_0825) - 836506..837300 (-) 795 WP_050334738.1 DNA-processing protein DprA -
  CUREO_RS04130 (CUREO_0826) - 837287..838462 (-) 1176 WP_050334740.1 divergent polysaccharide deacetylase family protein -
  CUREO_RS04135 (CUREO_0827) ilvC 838478..839500 (-) 1023 WP_050334743.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14274.54 Da        Isoelectric Point: 8.9664

>NTDB_id=152132 CUREO_RS04120 WP_050334737.1 836095..836481(-) (dprB) [Campylobacter ureolyticus RIGS 9880]
MIACIDVGLKRIGIALGYKNGVIVPINAVLRQNRNQAAKDVKHILDEWNVKKLVVGIPLGGSSEDEMRRRISHFVNLLDF
NGEIVFFDESFSSVEAGEFGVANHKKKDGKLDSLSAMVILQRYFDSLK

Nucleotide


Download         Length: 387 bp        

>NTDB_id=152132 CUREO_RS04120 WP_050334737.1 836095..836481(-) (dprB) [Campylobacter ureolyticus RIGS 9880]
ATGATTGCTTGTATAGATGTCGGACTTAAAAGAATTGGCATTGCTCTTGGGTATAAAAATGGTGTTATAGTCCCCATAAA
TGCAGTTTTAAGACAAAACAGAAACCAAGCAGCAAAAGATGTAAAACATATACTTGATGAATGGAATGTAAAAAAGCTCG
TTGTTGGTATTCCGCTTGGTGGAAGTAGCGAAGATGAGATGAGAAGACGAATTAGTCATTTTGTAAATTTGCTTGATTTT
AATGGTGAAATTGTGTTTTTTGATGAGAGCTTTTCAAGCGTTGAAGCAGGGGAGTTTGGTGTGGCAAATCATAAGAAAAA
AGATGGTAAGCTTGATAGTCTTTCAGCAATGGTGATTTTACAAAGATATTTTGATAGTTTAAAATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

52.713

100

0.531

Multiple sequence alignment