Detailed information NTG0152080

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A4X18_RS14875
• Genome accession: NZ_CP015138
• Coordinates: 3035519..3036511 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ecol_732
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3030519..3041511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4X18_RS14845 (A4X18_14830)	ispD	3030580..3031290 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A4X18_RS14850 (A4X18_14835)	ispF	3031290..3031769 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A4X18_RS14855 (A4X18_14840)	truD	3031766..3032815 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
A4X18_RS14860 (A4X18_14845)	surE	3032796..3033557 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A4X18_RS14865 (A4X18_14850)	pcm	3033551..3034177 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A4X18_RS14870 (A4X18_14855)	nlpD	3034362..3035456 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
A4X18_RS14875 (A4X18_14860)	rpoS	3035519..3036511 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A4X18_RS14880 (A4X18_14865)	-	3036682..3037233 (-)	552	WP_001179444.1	flavodoxin family protein	-
A4X18_RS14885 (A4X18_14870)	-	3037458..3038501 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
A4X18_RS14890 (A4X18_14875)	ygbN	3038644..3040008 (-)	1365	WP_000104433.1	GntP family transporter	-
A4X18_RS14895 (A4X18_14880)	ygbM	3040097..3040873 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=152080 A4X18_RS14875 WP_000081550.1 3035519..3036511(+) (rpoS) [Escherichia coli strain Ecol_732]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=152080 A4X18_RS14875 WP_000081550.1 3035519..3036511(+) (rpoS) [Escherichia coli strain Ecol_732]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715