Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LI65_RS08930 Genome accession   NZ_CP012167
Coordinates   1695881..1696507 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. steigerwaltii strain 34998     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1690881..1701507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI65_RS08910 (LI65_009110) - 1691280..1693040 (-) 1761 WP_039271166.1 Lon protease family protein -
  LI65_RS08915 (LI65_009115) matP 1693227..1693679 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  LI65_RS08920 (LI65_009120) ompA 1693745..1694797 (-) 1053 WP_114042601.1 porin OmpA -
  LI65_RS08925 (LI65_009125) sulA 1695154..1695663 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  LI65_RS08930 (LI65_009130) sxy/tfoX 1695881..1696507 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  LI65_RS08935 (LI65_009135) yccS 1696464..1698626 (-) 2163 WP_015570895.1 YccS family putative transporter -
  LI65_RS08940 (LI65_009140) - 1698645..1699091 (-) 447 WP_003858149.1 YccF domain-containing protein -
  LI65_RS08945 (LI65_009145) helD 1699214..1701268 (+) 2055 WP_039271162.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=152032 LI65_RS08930 WP_017384804.1 1695881..1696507(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain 34998]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=152032 LI65_RS08930 WP_017384804.1 1695881..1696507(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain 34998]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGTCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment