Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LI63_RS10050 Genome accession   NZ_CP012165
Coordinates   1817594..1818220 (+) Length   208 a.a.
NCBI ID   WP_023315767.1    Uniprot ID   A0A837FJ36
Organism   Enterobacter hormaechei subsp. xiangfangensis strain 34978     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1812594..1823220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI63_RS10030 (LI63_010340) - 1812993..1814753 (-) 1761 WP_032608967.1 AAA family ATPase -
  LI63_RS10035 (LI63_010345) matP 1814940..1815392 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  LI63_RS10040 (LI63_010350) ompA 1815458..1816510 (-) 1053 WP_017694761.1 porin OmpA -
  LI63_RS10045 (LI63_010355) sulA 1816867..1817376 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  LI63_RS10050 (LI63_010360) sxy/tfoX 1817594..1818220 (+) 627 WP_023315767.1 TfoX/Sxy family DNA transformation protein Regulator
  LI63_RS10055 (LI63_010365) yccS 1818177..1820339 (-) 2163 WP_032608968.1 YccS family putative transporter -
  LI63_RS10060 (LI63_010370) - 1820358..1820804 (-) 447 WP_003858149.1 YccF domain-containing protein -
  LI63_RS10065 (LI63_010375) helD 1820927..1822981 (+) 2055 WP_032608969.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.57 Da        Isoelectric Point: 9.4592

>NTDB_id=152010 LI63_RS10050 WP_023315767.1 1817594..1818220(+) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain 34978]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=152010 LI63_RS10050 WP_023315767.1 1817594..1818220(+) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain 34978]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837FJ36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment