Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LI67_RS08780 Genome accession   NZ_CP012162
Coordinates   1718925..1719551 (+) Length   208 a.a.
NCBI ID   WP_021240856.1    Uniprot ID   A0AB35EUS1
Organism   Enterobacter roggenkampii strain 35734     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1713925..1724551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI67_RS08760 (LI67_008865) - 1714324..1716084 (-) 1761 WP_044596860.1 Lon protease family protein -
  LI67_RS08765 (LI67_008870) matP 1716271..1716723 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  LI67_RS08770 (LI67_008875) ompA 1716788..1717843 (-) 1056 WP_023292865.1 porin OmpA -
  LI67_RS08775 (LI67_008880) sulA 1718198..1718707 (-) 510 WP_021240857.1 SOS-induced cell division inhibitor SulA -
  LI67_RS08780 (LI67_008885) sxy/tfoX 1718925..1719551 (+) 627 WP_021240856.1 TfoX/Sxy family DNA transformation protein Regulator
  LI67_RS08785 (LI67_008890) yccS 1719508..1721670 (-) 2163 WP_032651202.1 YccS family putative transporter -
  LI67_RS08790 (LI67_008895) - 1721690..1722136 (-) 447 WP_008499924.1 YccF domain-containing protein -
  LI67_RS08795 (LI67_008900) helD 1722260..1724314 (+) 2055 WP_044596859.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23914.49 Da        Isoelectric Point: 9.6030

>NTDB_id=151985 LI67_RS08780 WP_021240856.1 1718925..1719551(+) (sxy/tfoX) [Enterobacter roggenkampii strain 35734]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLYEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=151985 LI67_RS08780 WP_021240856.1 1718925..1719551(+) (sxy/tfoX) [Enterobacter roggenkampii strain 35734]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTAATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAAACCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
ATGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCAATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment