Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AFK25_RS10680 Genome accession   NZ_CP012152
Coordinates   2024239..2026593 (-) Length   784 a.a.
NCBI ID   WP_019416816.1    Uniprot ID   A0AAW7TK66
Organism   Anoxybacillus gonensis strain G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2019239..2031593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK25_RS10660 (AFK25_10680) - 2019351..2019617 (-) 267 WP_026011524.1 IreB family regulatory phosphoprotein -
  AFK25_RS10665 (AFK25_10685) alaS 2019700..2022333 (-) 2634 WP_009361680.1 alanine--tRNA ligase -
  AFK25_RS10670 (AFK25_10690) - 2022642..2023706 (-) 1065 WP_035067156.1 AI-2E family transporter -
  AFK25_RS14860 - 2023795..2023935 (-) 141 WP_081957758.1 YrzQ family protein -
  AFK25_RS10675 (AFK25_10695) - 2023946..2024137 (-) 192 WP_009361683.1 hypothetical protein -
  AFK25_RS10680 (AFK25_10700) recD2 2024239..2026593 (-) 2355 WP_019416816.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AFK25_RS10685 (AFK25_10705) - 2026605..2027261 (-) 657 WP_009361685.1 tetratricopeptide repeat protein -
  AFK25_RS10690 (AFK25_10710) mnmA 2027324..2028439 (-) 1116 WP_035067160.1 tRNA 2-thiouridine(34) synthase MnmA -
  AFK25_RS10695 (AFK25_10715) - 2028436..2029581 (-) 1146 WP_035067163.1 cysteine desulfurase family protein -
  AFK25_RS10700 (AFK25_10720) cymR 2029597..2030013 (-) 417 WP_009361688.1 cysteine metabolism transcriptional regulator CymR -
  AFK25_RS10705 (AFK25_10725) - 2030087..2031364 (-) 1278 WP_009361689.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88073.67 Da        Isoelectric Point: 4.9662

>NTDB_id=151920 AFK25_RS10680 WP_019416816.1 2024239..2026593(-) (recD2) [Anoxybacillus gonensis strain G2]
MALQQQLDLDERSFIKGVHIGTIFHNEDNLYSVIRVRVEETNEAHIEKDVVVTGYFPLLGEYDTYTFFGSFKEHPRFGKQ
YVVEHFRKEFPETKEGVIQYLSGGMFKGIGKKTAAAIVETLGERAISKILEDPDVLANVPKLTKAKAKQLYETLREHEGL
EQIMIALSQFGFGPQLSMKIYQVYKDETLQIIRTNPYQLVEDVEGIGFGRADDLGLQLGISGNHPDRIRAGCLYVIEQHC
MQEGHVYMTYEQLLTEVKQLLEAKRQELVDIACISREIVHLSEEGKLIAEEDRFYIPSLYFAEKGIVSNVKRLLEQTGTA
TFSEAEFLLALGEWEEEANIQYSQKQKEAIQQALCSPLFILTGGPGTGKTTVINGIVHLFAKLHGLSLDPASYDAEEPFP
ILLAAPTGRAAKRMTESTGLPAMTIHRLLGWSGDGFQRGEDEPICGKLLIVDEMSMVDTWLANQLLKSVPTTMQVIFVGD
EDQLPSVGPGQVLKDLLRANVIPTVRLTDIYRQAEGSSIISLAHAIKDGNIPHDLTSPQKDRSFIRCTSGQVVDVVKKVA
ENAKQKGYRAKDVQVLAPMYRGHAGIDRLNETLQQLFNPKCDNKRELVFGDVVYRVGDKVLQLVNQPDENVFNGDIGEIV
AIFYANENVEKQDLVVVSFDGNEVTYPKQELHQVTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSKQY
LILCGEEEAFQLGVMRTEDGTRQTTLYEKLIAALSPEQQLLPMEDANIGMEGVTPYDFMENDVT

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=151920 AFK25_RS10680 WP_019416816.1 2024239..2026593(-) (recD2) [Anoxybacillus gonensis strain G2]
ATGGCGTTGCAACAACAGCTAGATTTAGACGAGCGATCGTTTATTAAAGGCGTCCATATTGGCACGATTTTTCATAACGA
AGACAATTTATATTCTGTCATTCGTGTACGCGTGGAAGAGACAAATGAAGCGCATATAGAAAAAGACGTTGTTGTAACAG
GCTATTTCCCTTTGCTCGGAGAGTATGACACATATACGTTTTTCGGTTCGTTTAAAGAACATCCACGATTCGGGAAACAA
TATGTTGTCGAGCATTTTCGGAAAGAGTTTCCTGAAACAAAAGAAGGAGTTATTCAATATTTATCAGGTGGCATGTTTAA
AGGAATCGGAAAAAAAACAGCCGCCGCCATCGTAGAAACGTTAGGCGAGAGGGCCATTTCTAAAATATTAGAAGACCCCG
ATGTGCTTGCAAACGTACCAAAATTGACAAAAGCAAAAGCGAAGCAGTTGTATGAAACGTTGCGCGAACATGAAGGGCTA
GAACAAATTATGATCGCCTTGTCACAATTCGGATTCGGTCCGCAGTTGTCGATGAAAATTTATCAAGTGTACAAAGATGA
AACGTTACAAATCATTCGCACAAATCCGTATCAGCTTGTAGAAGACGTTGAAGGGATCGGATTTGGCCGAGCAGATGATC
TCGGTTTGCAGCTTGGCATTTCGGGCAATCACCCTGATCGTATTCGCGCAGGTTGCTTATATGTTATTGAACAACATTGT
ATGCAAGAAGGGCACGTCTACATGACGTATGAACAACTGCTTACGGAAGTGAAACAACTACTAGAAGCGAAACGTCAAGA
ACTCGTCGACATCGCTTGTATTTCCCGCGAAATCGTTCATTTATCTGAGGAAGGAAAGTTAATCGCTGAAGAAGATCGTT
TTTACATTCCTTCGCTATATTTTGCCGAAAAAGGCATTGTGTCAAACGTAAAGCGACTGCTTGAGCAAACGGGCACGGCT
ACGTTTTCTGAAGCTGAATTTTTACTTGCGCTTGGAGAATGGGAAGAAGAGGCAAACATTCAATACTCGCAAAAGCAAAA
AGAAGCGATTCAACAAGCACTTTGTTCCCCTTTATTTATTTTAACGGGCGGACCGGGCACAGGAAAAACGACGGTCATTA
ACGGCATTGTTCATTTGTTTGCGAAATTGCATGGGCTATCGCTTGATCCGGCGAGCTATGATGCGGAAGAGCCATTCCCT
ATTTTGCTTGCTGCTCCAACTGGACGTGCAGCGAAGCGCATGACGGAATCGACAGGATTGCCTGCGATGACGATTCATCG
TTTGCTCGGTTGGAGCGGTGACGGATTTCAGCGTGGAGAAGATGAACCGATTTGCGGAAAACTATTAATCGTTGATGAAA
TGTCGATGGTTGATACATGGTTAGCTAATCAGTTATTAAAATCTGTCCCAACAACGATGCAAGTCATTTTCGTTGGCGAC
GAAGACCAATTACCTTCTGTCGGTCCGGGACAAGTGTTAAAAGATTTGCTTCGCGCAAACGTCATTCCGACCGTTCGGCT
AACAGACATTTATCGTCAAGCAGAAGGTTCATCCATTATTTCGCTTGCTCATGCAATTAAAGATGGAAACATTCCTCACG
ATTTGACGTCTCCACAAAAAGATCGCTCATTTATTCGTTGTACGAGTGGACAAGTCGTTGACGTCGTAAAAAAAGTTGCT
GAAAATGCAAAACAAAAAGGATATCGCGCAAAAGATGTGCAAGTGCTTGCGCCGATGTATCGAGGCCACGCAGGAATTGA
TCGGCTTAACGAGACGCTTCAACAACTATTTAATCCGAAATGTGACAATAAACGTGAACTTGTTTTTGGTGATGTTGTTT
ATCGCGTGGGTGACAAAGTGTTGCAACTCGTCAATCAGCCAGACGAAAACGTATTTAACGGTGACATTGGTGAAATTGTT
GCTATTTTTTACGCTAACGAAAATGTTGAAAAACAAGACCTTGTCGTCGTTTCGTTTGATGGGAATGAAGTGACGTACCC
AAAACAAGAGTTGCATCAAGTGACGCATGCATATTGTTGTTCGATTCATAAATCCCAAGGAAGTGAATTTCCGATCGTCA
TTTTGCCTGTTGTAAAAAGCTATTATCGTATGCTTCGGCGCAATTTATTATACACAGCGATTACGCGCAGTAAGCAATAT
TTAATTTTATGCGGTGAAGAAGAAGCATTCCAACTCGGAGTGATGCGAACAGAAGATGGAACGAGACAGACGACATTATA
CGAAAAATTAATCGCTGCTCTTTCACCTGAACAACAACTGCTTCCGATGGAAGATGCGAACATCGGAATGGAAGGTGTTA
CCCCGTATGACTTTATGGAAAATGACGTAACATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-549)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-657)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.139

100

0.616

Multiple sequence alignment