Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AFK25_RS09785 Genome accession   NZ_CP012152
Coordinates   1865769..1867499 (-) Length   576 a.a.
NCBI ID   WP_035066809.1    Uniprot ID   A0AAW7TA82
Organism   Anoxybacillus gonensis strain G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1860769..1872499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK25_RS09765 (AFK25_09785) - 1862182..1862436 (+) 255 WP_009373867.1 DUF2627 domain-containing protein -
  AFK25_RS09770 (AFK25_09790) - 1862428..1863162 (-) 735 WP_035066819.1 glycerophosphodiester phosphodiesterase -
  AFK25_RS14845 - 1863218..1863364 (+) 147 WP_009373869.1 YycC family protein -
  AFK25_RS09775 (AFK25_09795) spo0A 1863382..1864161 (-) 780 WP_009373870.1 sporulation transcription factor Spo0A -
  AFK25_RS09780 (AFK25_09800) spoIVB 1864378..1865655 (-) 1278 WP_035066817.1 SpoIVB peptidase -
  AFK25_RS09785 (AFK25_09805) recN 1865769..1867499 (-) 1731 WP_035066809.1 DNA repair protein RecN Machinery gene
  AFK25_RS09790 (AFK25_09810) ahrC 1867518..1867967 (-) 450 WP_004889608.1 transcriptional regulator AhrC/ArgR -
  AFK25_RS09795 (AFK25_09815) - 1868061..1868903 (-) 843 WP_009373874.1 TlyA family RNA methyltransferase -
  AFK25_RS09800 (AFK25_09820) dxs 1868907..1870799 (-) 1893 WP_009373876.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AFK25_RS09805 (AFK25_09825) - 1870973..1871845 (-) 873 WP_009373878.1 polyprenyl synthetase family protein -
  AFK25_RS09810 (AFK25_09830) - 1871849..1872061 (-) 213 WP_009373880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 65580.45 Da        Isoelectric Point: 4.8185

>NTDB_id=151915 AFK25_RS09785 WP_035066809.1 1865769..1867499(-) (recN) [Anoxybacillus gonensis strain G2]
MLAELSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGETKAEIEGLFLLEQDDHPCYSK
CAELGIDISDSMIVLRRELTVNGKSVCRVNGKLVTIATLREIGSTLVDIHGQHEHQELLDESKHLHLLDEYGGEHIRDAL
EEYGALYATYERVKRQLQKLNENEQQMAHRLDLLTFQLDEIQKADLQIDEDERLMEERRKIVNFQKIYEALQSSYEALYG
EQRGLDWIGLAMNHLDHVSDIDASVKQAQEVVSNCYYLLEEVAHQLREQLDQLEYDPLRLDEIESRLNEINHLKRKYGQT
VRDILEYAAKVEEEIETIQHRDDHIHKLQTELQSITADLLVEAKHISELRMQYAKQLIDDIHQELKDLYMEKTTFDVVFR
KRQGSYDDPLLDGTPVKLQANGMDEVEFYISTNPGEPLKPLAKVASGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRVARHSQVLCISHLPQVAAMADTHLFIAKETIDGRTKTTVEALNEEEKINEISRMISGVEITELTKQH
ARELLQLAEKIKNETV

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=151915 AFK25_RS09785 WP_035066809.1 1865769..1867499(-) (recN) [Anoxybacillus gonensis strain G2]
ATGTTAGCAGAGTTATCCATTAAAAATTTTGCGATTATTGAATCGCTCTCGCTTTCATTTGAAAAAGGATTAACGGTTTT
AACAGGAGAAACGGGAGCGGGAAAATCCATCATTATTGATGCCATTCACTTATTAATTGGCGGACGAGGTTCCGCAGAGT
TTGTTCGATACGGGGAAACAAAAGCGGAAATTGAAGGATTATTTTTGCTTGAACAAGATGACCATCCGTGTTACAGCAAA
TGCGCGGAACTTGGCATCGATATAAGCGACAGCATGATTGTGCTTCGACGGGAGCTAACAGTAAACGGAAAAAGCGTTTG
TCGGGTAAATGGAAAATTAGTAACGATTGCGACGTTGCGCGAAATTGGTTCAACGCTCGTGGATATTCACGGGCAACATG
AGCATCAAGAGTTGCTCGATGAAAGTAAACATTTACACTTATTAGACGAATATGGAGGCGAGCATATTCGTGACGCGTTA
GAAGAATATGGAGCGTTATATGCTACATATGAACGAGTGAAGCGTCAACTGCAAAAATTAAATGAAAATGAGCAACAAAT
GGCACATCGATTAGATTTGTTAACATTTCAGTTAGATGAAATTCAAAAAGCAGATTTGCAAATAGATGAAGATGAACGGC
TGATGGAAGAACGACGAAAAATCGTTAACTTCCAAAAAATATACGAGGCGTTACAAAGCAGTTATGAGGCGCTTTATGGA
GAGCAACGTGGACTAGATTGGATTGGATTAGCGATGAACCATTTAGACCATGTGAGCGATATCGATGCCTCAGTGAAACA
AGCTCAAGAAGTCGTATCGAATTGCTATTACTTGTTAGAAGAAGTCGCTCACCAACTACGTGAACAGTTAGATCAATTAG
AATACGATCCGCTTCGGCTGGACGAAATTGAAAGTCGCTTAAATGAAATTAATCATTTAAAACGAAAATACGGTCAAACG
GTGCGCGACATTTTAGAGTACGCTGCAAAAGTGGAAGAAGAAATCGAAACGATTCAACATCGCGATGACCACATTCATAA
ATTACAGACTGAGCTCCAATCGATTACGGCTGATTTGCTCGTTGAAGCGAAACATATTAGCGAATTGCGTATGCAATATG
CGAAACAACTCATCGATGACATTCATCAAGAGCTAAAAGATTTATACATGGAAAAAACGACGTTTGATGTCGTTTTTCGA
AAACGTCAAGGATCGTACGATGATCCGCTGCTCGATGGAACACCTGTTAAATTGCAGGCAAACGGAATGGATGAAGTTGA
GTTTTACATTTCGACAAACCCCGGGGAACCGTTAAAGCCGCTTGCCAAAGTCGCATCGGGCGGGGAGTTATCGCGCATGA
TGCTTGCTTTGAAAAGTATTTTTTCTAAACATCAAGGTGTGACGTCCATTATTTTTGATGAAGTAGATACAGGAGTAAGT
GGGCGCGTCGCTCAAGCCATTGCAGAAAAAATTTATCGCGTCGCACGTCATTCTCAAGTATTATGTATTTCGCACTTGCC
ACAAGTTGCAGCGATGGCAGATACGCATTTATTTATCGCAAAAGAAACGATCGATGGACGGACGAAAACAACTGTCGAGG
CGTTAAATGAAGAAGAAAAAATTAACGAAATAAGTCGGATGATTTCTGGGGTGGAAATTACAGAACTGACGAAACAGCAT
GCGCGTGAGTTGTTACAATTAGCGGAAAAAATCAAAAATGAAACAGTATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.13

99.826

0.63

Multiple sequence alignment