Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AFK25_RS03495 Genome accession   NZ_CP012152
Coordinates   642691..644487 (+) Length   598 a.a.
NCBI ID   WP_128713012.1    Uniprot ID   A0AAW7TEL2
Organism   Anoxybacillus gonensis strain G2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 637691..649487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK25_RS03470 (AFK25_03485) - 638141..638332 (-) 192 WP_019417864.1 hypothetical protein -
  AFK25_RS03475 (AFK25_03490) spxA 638583..638993 (+) 411 WP_009362179.1 transcriptional regulator SpxA -
  AFK25_RS03480 (AFK25_03495) cls 639011..640519 (-) 1509 WP_035064953.1 cardiolipin synthase -
  AFK25_RS03485 (AFK25_03500) mecA 640577..641245 (-) 669 WP_009362177.1 adaptor protein MecA -
  AFK25_RS03490 (AFK25_03505) - 641469..642653 (+) 1185 WP_035064956.1 competence protein CoiA -
  AFK25_RS03495 (AFK25_03510) pepF 642691..644487 (+) 1797 WP_128713012.1 oligoendopeptidase F Regulator
  AFK25_RS15060 (AFK25_03515) - 644518..644682 (-) 165 WP_009362174.1 hypothetical protein -
  AFK25_RS03500 (AFK25_03520) - 644903..645745 (-) 843 WP_081957684.1 ClpXP adapter SpxH family protein -
  AFK25_RS03505 (AFK25_03525) - 645732..646133 (-) 402 WP_009362172.1 hypothetical protein -
  AFK25_RS03510 (AFK25_03530) - 646190..646801 (-) 612 WP_035064964.1 lytic transglycosylase domain-containing protein -
  AFK25_RS03515 (AFK25_03535) - 646798..647388 (-) 591 WP_035064967.1 CYTH domain-containing protein -
  AFK25_RS03520 (AFK25_03540) - 647518..647874 (+) 357 WP_420806287.1 hypothetical protein -
  AFK25_RS03525 (AFK25_03545) - 647887..648534 (+) 648 WP_035064973.1 GTP pyrophosphokinase -
  AFK25_RS03530 (AFK25_03550) - 648531..649322 (+) 792 WP_035064976.1 NAD kinase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 69492.25 Da        Isoelectric Point: 5.0187

>NTDB_id=151907 AFK25_RS03495 WP_128713012.1 642691..644487(+) (pepF) [Anoxybacillus gonensis strain G2]
MAKSLPTRKDVPTEYTWRLEDIFATDEQWEEEFQAITALLPKFSEYKGKLGESAETLYEALQYRDHVLLRLGKLYAYAHM
RHDEDTTNSLYQGLEARAEGLYAEAGNVMAFIVPEILALDESVVRTFLQQYEPLRLYEHELDEMNRQRPHVLPEKEEAIL
AQAADVMNASSNTFGALNNADLRFPTIQDENGEEVEVTHGRYIRFLESEDRRVRHDAFKAVYDTYRKYENTFASTLNGAV
KRNNFFARVRNYRSAREAALSKNQIPETVYDNLIETIHRYLPLLHRYVQLRKRVLGLDELHMYDLYTPLVKQVDMKVTYE
EAKELLLKGLAPLGEQYIAIVKEGFDNRWVDVHETRGKRSGAYSSGSYGTNPYILMNWQDNVNNLFTLAHEFGHSVHSYY
TRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLQTIDDEKKKLYLLNHYLETFRGTVFRQTMFAEFEHMIHQMAQNGEAL
TAQTLTEKYYELNKTYFGDGIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGAPAVERYIAFLKAGSS
DYPIEVLKKAGVDMTSPEPIEQACQVFEQKLQQLEQLL

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=151907 AFK25_RS03495 WP_128713012.1 642691..644487(+) (pepF) [Anoxybacillus gonensis strain G2]
ATGGCAAAATCGTTGCCGACACGTAAAGATGTTCCGACAGAGTATACGTGGCGTCTTGAAGATATTTTTGCGACAGATGA
ACAATGGGAAGAGGAGTTTCAGGCGATTACCGCGCTTCTTCCGAAATTTTCGGAGTATAAAGGAAAGCTAGGAGAAAGTG
CAGAAACGTTATATGAAGCGTTACAATATCGCGATCATGTGTTGTTGCGATTAGGAAAGCTATATGCGTATGCTCATATG
CGCCATGATGAAGATACGACAAATTCGCTTTATCAAGGATTGGAAGCAAGAGCGGAAGGATTGTATGCGGAAGCAGGCAA
TGTGATGGCGTTTATCGTGCCGGAAATTTTAGCGCTTGATGAATCGGTCGTGCGCACGTTTTTACAACAATACGAACCGC
TTCGACTGTATGAGCATGAACTAGATGAAATGAATCGCCAACGTCCGCACGTGTTACCGGAAAAAGAAGAAGCGATCCTT
GCGCAAGCAGCGGATGTCATGAATGCGTCGAGCAATACGTTTGGGGCGCTAAATAATGCCGATTTGCGTTTTCCGACAAT
TCAAGATGAGAACGGGGAAGAAGTGGAAGTCACGCACGGTCGTTACATTCGTTTCCTTGAAAGCGAAGATCGCCGCGTGC
GGCACGATGCGTTTAAAGCGGTGTACGATACATATCGTAAATATGAAAATACGTTCGCTAGCACGTTAAACGGAGCGGTG
AAGCGCAATAACTTTTTTGCGCGCGTTCGCAACTATCGCTCGGCGCGTGAGGCGGCATTAAGCAAAAATCAAATTCCTGA
AACGGTGTACGATAATTTAATCGAAACGATTCATCGCTATTTGCCGCTGTTGCATCGTTACGTTCAGCTGCGCAAGCGCG
TGCTCGGATTAGATGAGTTGCATATGTACGATTTATATACGCCGCTTGTGAAACAAGTCGATATGAAGGTGACGTACGAA
GAAGCGAAAGAGTTATTATTAAAAGGGCTCGCTCCGCTTGGCGAACAATATATTGCGATCGTAAAAGAAGGATTTGACAA
TCGTTGGGTCGATGTGCATGAAACGCGCGGCAAACGAAGCGGCGCATACTCGTCTGGTTCATATGGCACGAATCCGTACA
TTTTAATGAACTGGCAAGACAATGTCAATAACTTATTTACGCTTGCGCACGAGTTTGGCCATTCGGTGCATAGCTATTAT
ACGCGCAAATATCAACCGTATCCGTACGGAAACTATTCGATTTTCGTAGCCGAAGTGGCATCGACGTGCAACGAGGCGCT
GCTCAACGACTATTTATTACAGACGATCGATGATGAAAAGAAAAAGTTATATTTATTAAACCATTATTTAGAAACGTTCC
GTGGAACGGTGTTCCGTCAAACGATGTTTGCTGAGTTTGAACATATGATTCATCAAATGGCGCAAAATGGTGAGGCGCTC
ACCGCACAAACGTTAACGGAAAAATATTACGAATTAAATAAAACATATTTTGGGGACGGCATCGTCATCGATGAAGAAAT
CGGCTTAGAATGGGCACGCATTCCGCATTTTTATTACAACTATTATGTATATCAATATGCGACAGGCTTTAGCGCGGCCA
CAGCGTTAAGTAAACAAATTTTAGAAGAAGGCGCGCCAGCTGTCGAGCGCTACATTGCGTTTTTAAAAGCTGGAAGCTCC
GATTATCCGATTGAAGTGTTGAAAAAAGCAGGTGTCGATATGACATCTCCAGAGCCAATCGAACAAGCGTGCCAAGTGTT
TGAACAAAAACTACAACAACTGGAGCAACTATTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-585)

Oligopeptidase F (Peptidase_M3_N)

(115-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.9

98.829

0.483

Multiple sequence alignment