Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CJM1cam_RS07050 Genome accession   NZ_CP012149
Coordinates   1385780..1386091 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJM1cam     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380780..1391091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM1cam_RS07030 (CJM1cam_1416) ctsE 1381649..1383208 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  CJM1cam_RS07035 (CJM1cam_1417) ctsX 1383198..1383785 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  CJM1cam_RS07040 (CJM1cam_1418) ctsP 1383789..1384397 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  CJM1cam_RS07045 (CJM1cam_1419) ctsD 1384390..1385802 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJM1cam_RS07050 (CJM1cam_1420) ctsR 1385780..1386091 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  CJM1cam_RS07055 (CJM1cam_1421) nifJ 1386115..1389675 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CJM1cam_RS07060 (CJM1cam_1422) - 1389768..1390409 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=151884 CJM1cam_RS07050 WP_002862131.1 1385780..1386091(-) (ctsR) [Campylobacter jejuni strain CJM1cam]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=151884 CJM1cam_RS07050 WP_002862131.1 1385780..1386091(-) (ctsR) [Campylobacter jejuni strain CJM1cam]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment