Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   A4U84_RS10535 Genome accession   NZ_CP015099
Coordinates   2199409..2201685 (-) Length   758 a.a.
NCBI ID   WP_043896505.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SC1401     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2194409..2206685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U84_RS10505 (A4U84_10505) tadA 2195893..2196429 (+) 537 WP_043894448.1 tRNA adenosine(34) deaminase TadA -
  A4U84_RS10510 (A4U84_10510) yfbV 2196411..2196845 (-) 435 WP_005711563.1 terminus macrodomain insulation protein YfbV -
  A4U84_RS10515 (A4U84_10515) - 2197024..2197752 (+) 729 WP_021112343.1 hypothetical protein -
  A4U84_RS10520 (A4U84_10520) - 2197761..2198324 (+) 564 WP_021113566.1 septation protein A -
  A4U84_RS10525 (A4U84_10525) yciA 2198308..2198748 (+) 441 WP_005711558.1 acyl-CoA thioester hydrolase YciA -
  A4U84_RS10530 (A4U84_10530) - 2198760..2199056 (+) 297 WP_021110790.1 YciI family protein -
  A4U84_RS12330 - 2199149..2199268 (+) 120 Protein_2072 NAD-dependent epimerase/dehydratase family protein -
  A4U84_RS10535 (A4U84_10535) rec2 2199409..2201685 (-) 2277 WP_043896505.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A4U84_RS10540 (A4U84_10540) uspA 2202000..2202425 (+) 426 WP_021112353.1 universal stress protein UspA -
  A4U84_RS10545 (A4U84_10545) alaS 2202650..2205277 (+) 2628 WP_062924458.1 alanine--tRNA ligase -
  A4U84_RS10550 (A4U84_10550) csrA 2205341..2205526 (+) 186 WP_021109569.1 carbon storage regulator CsrA -
  A4U84_RS10555 (A4U84_10555) galU 2205707..2206594 (+) 888 WP_021112344.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 86299.79 Da        Isoelectric Point: 9.2790

>NTDB_id=151771 A4U84_RS10535 WP_043896505.1 2199409..2201685(-) (rec2) [Glaesserella parasuis strain SC1401]
MSIDRVCLMLFFGLLPLIVLPASWLGYVVVFSLALALWGVWRGKLGILLLGGVLAVSYAQIMQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELALKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTAPFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWTAKAGQWL
LLRFRYLKSVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARRHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQAFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWWLCHQLAEWGIDWIEPFSHHWLYLSVDQQWGLICLNLLIIIGLYGVFQQRFSLYYGLAT
VALPLALWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHQGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIAGNQWQFSTMHLEAIYPLQLSERAKNEHSCVLRVSIG
QYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHIQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGANK

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=151771 A4U84_RS10535 WP_043896505.1 2199409..2201685(-) (rec2) [Glaesserella parasuis strain SC1401]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCGGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TGTGGTGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATGCAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCTGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGGCATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCCCTTTTGCAACGCAAGGGTT
ACTGCTTGCCCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAGATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGACGGCGAAAGCTGGGCAGTGGTTA
TTATTGCGATTTCGTTATCTGAAATCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCGTTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTCGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTGCTATTAGTCGTCTTTGATCCGCTGACGTTACTT
TCCGATAGCTTTTGGCTCTCTGTTTTGGCTGTTGCTAGTCTAATTATTTGGTATCAGGCTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAGTTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGTACATCACCTTTCGCTTTGTTAGCCAATTTGATCATTGTTCCACTTTAT
AGCTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTGGCTTTGCCATCAACT
TGCAGAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGATCAACAATGGGGATTAA
TATGCCTTAATCTATTGATTATAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTCTCTATTATGGGTTAGCAACA
GTGGCATTGCCTTTAGCATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCACTTGTAAAATGGGTGAA
TTTTGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCAAGGTAAACAGAAAGCCATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGTACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTGGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGCAGGCAATCAGTGGCAGTTCAGCACAATGC
ACCTTGAAGCGATTTATCCTTTACAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
CAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGCCAAACTTTGTTAGCTCACATCCAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAAGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGGCAAATAAATAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(191-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-693)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

41.975

96.174

0.404