Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A4U84_RS01810 Genome accession   NZ_CP015099
Coordinates   415034..416584 (-) Length   516 a.a.
NCBI ID   WP_062923915.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SC1401     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 410034..421584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U84_RS01785 (A4U84_01785) - 410228..411949 (+) 1722 WP_062923912.1 acetolactate synthase 3 large subunit -
  A4U84_RS01790 (A4U84_01790) ilvN 411942..412433 (+) 492 WP_016528224.1 acetolactate synthase small subunit -
  A4U84_RS01795 (A4U84_01795) - 412539..413360 (-) 822 WP_062923913.1 PHP domain-containing protein -
  A4U84_RS01800 (A4U84_01800) - 413361..413957 (-) 597 WP_062923914.1 DNA glycosylase -
  A4U84_RS01805 (A4U84_01805) - 413992..414951 (-) 960 WP_005712686.1 SAM hydrolase/SAM-dependent halogenase family protein -
  A4U84_RS01810 (A4U84_01810) sbcB 415034..416584 (-) 1551 WP_062923915.1 exodeoxyribonuclease I Machinery gene
  A4U84_RS01815 (A4U84_01815) - 416795..417079 (-) 285 WP_010785923.1 type II toxin-antitoxin system RelE family toxin -
  A4U84_RS01820 (A4U84_01820) - 417076..417330 (-) 255 WP_021118772.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  A4U84_RS01825 (A4U84_01825) - 417447..418202 (-) 756 WP_062923916.1 ABC transporter permease -
  A4U84_RS01830 (A4U84_01830) - 418224..419120 (-) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  A4U84_RS01835 (A4U84_01835) dnaX 419126..421144 (-) 2019 WP_062923917.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58834.98 Da        Isoelectric Point: 5.3964

>NTDB_id=151740 A4U84_RS01810 WP_062923915.1 415034..416584(-) (sbcB) [Glaesserella parasuis strain SC1401]
MVQTTFFIYDYESFGIDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRQACLENLKLLKSQKSLVREKVIDIFSEERNYPASNNIETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPR
IEPLLFHYRARHYSETLTRAEQVRWQKYCYQQLETKAEAFEQAVDLLSAQYHDNPEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=151740 A4U84_RS01810 WP_062923915.1 415034..416584(-) (sbcB) [Glaesserella parasuis strain SC1401]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTATCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTAATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACACCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGCAACACCGCTTGG
GTTGTGCCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCTAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATCGATCGTCAAGCCTGTTTAGAAAATTTAAAACTGCTAAAATCCCAAAAAAGCCTTGTGCGAGAAAAGGTTATTGA
TATTTTTTCTGAGGAAAGGAATTATCCAGCGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCGATTTTGCGAAATCTAAAACCTGAAGAGCTTGCACATCACGGCTTGAAATTTAGCGATCCAAGA
ATTGAACCTCTACTTTTCCATTATCGAGCAAGACATTACTCAGAAACCTTAACACGCGCAGAACAAGTACGCTGGCAAAA
GTATTGCTATCAACAACTTGAAACAAAAGCAGAGGCCTTTGAACAAGCGGTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGAAAAGATAAAATTATTGACAGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAGTCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-469)

Exonuclease (RNase_T)

(8-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.077

90.891

0.51