Detailed information NTG0151671

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WLH_RS08530
• Genome accession: NZ_CP015085
• Coordinates: 1609851..1610843 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O25b:H4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1604851..1615843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WLH_RS08510 (WLH_01751)	ygbM	1605489..1606265 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
WLH_RS08515 (WLH_01752)	ygbN	1606354..1607718 (+)	1365	WP_000104433.1	GntP family transporter	-
WLH_RS08520 (WLH_01753)	-	1607861..1608904 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
WLH_RS08525 (WLH_01755)	-	1609129..1609680 (+)	552	WP_001179444.1	flavodoxin family protein	-
WLH_RS08530 (WLH_01756)	rpoS	1609851..1610843 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
WLH_RS08535 (WLH_01757)	nlpD	1610906..1612000 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
WLH_RS08540 (WLH_01759)	pcm	1612185..1612811 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
WLH_RS08545 (WLH_01760)	surE	1612805..1613566 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
WLH_RS08550 (WLH_01761)	truD	1613547..1614596 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
WLH_RS08555 (WLH_01762)	ispF	1614593..1615072 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WLH_RS08560 (WLH_01763)	ispD	1615072..1615782 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=151671 WLH_RS08530 WP_000081550.1 1609851..1610843(-) (rpoS) [Escherichia coli O25b:H4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=151671 WLH_RS08530 WP_000081550.1 1609851..1610843(-) (rpoS) [Escherichia coli O25b:H4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715