Detailed information NTG0151541

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A4R37_RS12305
• Genome accession: NZ_CP015076
• Coordinates: 2410158..2411150 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ecol_448
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2405158..2416150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4R37_RS12285 (A4R37_12285)	ygbM	2405796..2406572 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
A4R37_RS12290 (A4R37_12290)	ygbN	2406661..2408025 (+)	1365	WP_000104433.1	GntP family transporter	-
A4R37_RS12295 (A4R37_12295)	-	2408168..2409211 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
A4R37_RS12300 (A4R37_12300)	-	2409436..2409987 (+)	552	WP_001179444.1	flavodoxin family protein	-
A4R37_RS12305 (A4R37_12305)	rpoS	2410158..2411150 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A4R37_RS12310 (A4R37_12310)	nlpD	2411213..2412307 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
A4R37_RS12315 (A4R37_12315)	pcm	2412492..2413118 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A4R37_RS12320 (A4R37_12320)	surE	2413112..2413873 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A4R37_RS12325 (A4R37_12325)	truD	2413854..2414903 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
A4R37_RS12330 (A4R37_12330)	ispF	2414900..2415379 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A4R37_RS12335 (A4R37_12335)	ispD	2415379..2416089 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=151541 A4R37_RS12305 WP_000081550.1 2410158..2411150(-) (rpoS) [Escherichia coli strain Ecol_448]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=151541 A4R37_RS12305 WP_000081550.1 2410158..2411150(-) (rpoS) [Escherichia coli strain Ecol_448]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715