Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A176_RS27825 Genome accession   NZ_CP012109
Coordinates   7127857..7129224 (+) Length   455 a.a.
NCBI ID   WP_002635305.1    Uniprot ID   A0A0H4X5E3
Organism   Myxococcus hansupus strain contaminant ex DSM 436     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7122857..7134224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A176_RS27800 (A176_005732) - 7123960..7124238 (-) 279 WP_002635314.1 hypothetical protein -
  A176_RS27805 (A176_005733) bioD 7124371..7125054 (-) 684 WP_002635312.1 dethiobiotin synthase -
  A176_RS27810 (A176_005734) bioF 7125047..7126222 (-) 1176 WP_002635310.1 8-amino-7-oxononanoate synthase -
  A176_RS27815 (A176_005735) bioB 7126229..7127266 (-) 1038 WP_002635308.1 biotin synthase BioB -
  A176_RS27820 (A176_005736) - 7127406..7127675 (-) 270 WP_002635306.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  A176_RS27825 (A176_005737) radA 7127857..7129224 (+) 1368 WP_002635305.1 DNA repair protein RadA Machinery gene
  A176_RS27830 (A176_005738) - 7129660..7131834 (+) 2175 WP_002635304.1 glycosyl hydrolase family 18 protein -
  A176_RS27835 (A176_005739) - 7131891..7132439 (-) 549 WP_002635303.1 dihydrofolate reductase family protein -
  A176_RS27840 (A176_005740) - 7132733..7134217 (+) 1485 WP_002635302.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48112.45 Da        Isoelectric Point: 7.9212

>NTDB_id=151425 A176_RS27825 WP_002635305.1 7127857..7129224(+) (radA) [Myxococcus hansupus strain contaminant ex DSM 436]
MAKAKTHYTCQACGYKTAKWLGKCPDCGAWSSLLEESDPKSDDRRPAWGASGGAARPTLLKDVSGETETRRRTGIAEFDR
VLGGGVVGGSLVLLGGDPGIGKSTLLLAALDKLARHGPVLYVSGEESLRQTKMRAERLRVTGDSIHLFAETDAERVLTAA
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLAEVPDPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVIGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRLEDAGPKMKVVGVETLGDALVAMFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=151425 A176_RS27825 WP_002635305.1 7127857..7129224(+) (radA) [Myxococcus hansupus strain contaminant ex DSM 436]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGGTACAAAACGGCGAAGTGGCTCGGGAAGTGCCCGGACTG
TGGCGCGTGGAGCTCCCTGCTGGAGGAGAGCGACCCGAAGTCGGATGACCGGCGTCCGGCGTGGGGGGCCTCGGGTGGCG
CGGCGCGGCCCACGCTGCTGAAGGACGTGAGCGGCGAGACGGAGACGCGGCGCCGCACGGGCATCGCCGAGTTCGACCGG
GTGCTGGGCGGCGGCGTGGTGGGCGGCTCCCTCGTGTTGCTGGGGGGTGACCCCGGTATCGGCAAGTCCACGCTGCTGCT
GGCCGCGCTGGACAAGCTGGCGCGTCACGGACCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCCGAGCGGCTCCGCGTGACGGGCGACTCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGACCGCGGCG
GAGGCGCTGAAGCCGCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCCTACGCGAAGCGCTCGGGCGTGCCGACGTTCCTCGTGGGCC
ACGTGACGAAGGAAGGCTCCATCGCGGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGTGGCCACCCGTTCCGCATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTCGCGGAGGTGCCGGACCCGTCCGCGCTGTTCCTGTCGGAGCGGCCGGTGGGCAAGTCGGGCAGCGTCG
TGACCAGCACGCTCAACGGCACGCGCCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGTTACGGCACCGCA
CGGCGCACGGCCATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCCGCGGTGCTGGAGAAGAAGGAGGAGATTCCGCT
GGTGGGCTGCGACCTGTTCGTCAACGTGGCGGGCGGCATGCAGCTCACGGAGCCGGCATGTGACCTCGCGGTGTGCGCGG
CGTTGGTGAGCAGCCTGCAGAACCGGCCGTTGGACCCGAAGACGCTGGTGATTGGCGAAGTGGGCCTCGCGGGAGAGGTG
CGCGCGGTGGGGCAAGTGGAGCCCCGGCTGGCGGAAGCCGCGAAGATGGGCTTCCAGCGCGTGGTGATGCCCGCGGGCAG
CGCGCGGCGGCTGGAGGACGCGGGCCCGAAGATGAAGGTCGTCGGCGTGGAGACGCTCGGCGACGCGCTGGTCGCGATGT
TCGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4X5E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.304

99.78

0.532
  radA Streptococcus mitis NCTC 12261

51.429

100

0.514
  radA Streptococcus mitis SK321

51.316

100

0.514
  radA Streptococcus pneumoniae Rx1

51.209

100

0.512
  radA Streptococcus pneumoniae D39

51.209

100

0.512
  radA Streptococcus pneumoniae R6

51.209

100

0.512
  radA Streptococcus pneumoniae TIGR4

51.209

100

0.512

Multiple sequence alignment