Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | AC241_RS07260 | Genome accession | NZ_CP012099 |
| Coordinates | 1386483..1386761 (+) | Length | 92 a.a. |
| NCBI ID | WP_050842979.1 | Uniprot ID | - |
| Organism | Bacillus thuringiensis strain HS18-1 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1378373..1416636 | 1386483..1386761 | within | 0 |
Gene organization within MGE regions
Location: 1378373..1416636
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AC241_RS07200 (AC241_07195) | - | 1378373..1379482 (-) | 1110 | WP_029437994.1 | tyrosine-type recombinase/integrase | - |
| AC241_RS34260 | - | 1379682..1379837 (+) | 156 | WP_155417051.1 | hypothetical protein | - |
| AC241_RS07205 (AC241_07200) | - | 1379903..1380247 (-) | 345 | WP_050842967.1 | helix-turn-helix domain-containing protein | - |
| AC241_RS07210 (AC241_07205) | - | 1380772..1381911 (+) | 1140 | WP_050842969.1 | AimR family lysis-lysogeny pheromone receptor | - |
| AC241_RS34700 | - | 1381915..1382052 (+) | 138 | WP_162901155.1 | hypothetical protein | - |
| AC241_RS34265 | - | 1382202..1382354 (+) | 153 | WP_155417052.1 | hypothetical protein | - |
| AC241_RS07215 (AC241_07210) | - | 1382361..1382708 (-) | 348 | WP_029437997.1 | helix-turn-helix domain-containing protein | - |
| AC241_RS07220 (AC241_07215) | - | 1382884..1383102 (+) | 219 | WP_033694466.1 | helix-turn-helix domain-containing protein | - |
| AC241_RS07225 (AC241_07220) | - | 1383160..1383834 (+) | 675 | WP_029437999.1 | Rha family transcriptional regulator | - |
| AC241_RS07230 (AC241_07225) | - | 1383872..1384147 (+) | 276 | WP_029438000.1 | helix-turn-helix domain-containing protein | - |
| AC241_RS34705 (AC241_07235) | - | 1384377..1384553 (+) | 177 | WP_050842971.1 | hypothetical protein | - |
| AC241_RS07245 (AC241_07240) | - | 1384558..1385421 (+) | 864 | WP_050842973.1 | conserved phage C-terminal domain-containing protein | - |
| AC241_RS07250 (AC241_07245) | - | 1385363..1386238 (+) | 876 | WP_050842975.1 | DnaA ATPase domain-containing protein | - |
| AC241_RS07255 (AC241_07250) | - | 1386272..1386466 (+) | 195 | WP_050842977.1 | hypothetical protein | - |
| AC241_RS07260 (AC241_07255) | abrB | 1386483..1386761 (+) | 279 | WP_050842979.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| AC241_RS07265 (AC241_07260) | - | 1386754..1387113 (+) | 360 | WP_050842981.1 | hypothetical protein | - |
| AC241_RS07270 (AC241_07265) | - | 1387141..1387305 (+) | 165 | WP_050842983.1 | DUF3954 domain-containing protein | - |
| AC241_RS07275 (AC241_07270) | - | 1387333..1387581 (+) | 249 | WP_050842985.1 | hypothetical protein | - |
| AC241_RS07280 (AC241_07275) | - | 1387590..1387856 (-) | 267 | WP_050842986.1 | hypothetical protein | - |
| AC241_RS07285 (AC241_07280) | - | 1387980..1388489 (+) | 510 | WP_050842989.1 | dUTP diphosphatase | - |
| AC241_RS07295 (AC241_07290) | - | 1388979..1389578 (+) | 600 | WP_016081488.1 | hypothetical protein | - |
| AC241_RS34710 (AC241_07295) | - | 1390346..1390510 (+) | 165 | WP_050842992.1 | hypothetical protein | - |
| AC241_RS07305 (AC241_07300) | - | 1390692..1390883 (+) | 192 | WP_000074682.1 | hypothetical protein | - |
| AC241_RS34270 | - | 1391216..1391422 (+) | 207 | WP_141558559.1 | hypothetical protein | - |
| AC241_RS07315 (AC241_07310) | - | 1391461..1391583 (+) | 123 | WP_050842994.1 | DUF3983 domain-containing protein | - |
| AC241_RS34715 (AC241_07315) | - | 1391699..1391869 (+) | 171 | WP_000677279.1 | hypothetical protein | - |
| AC241_RS07325 (AC241_07320) | - | 1391897..1392379 (+) | 483 | WP_050842995.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| AC241_RS07330 (AC241_07325) | - | 1392379..1392921 (+) | 543 | WP_050842997.1 | site-specific integrase | - |
| AC241_RS07335 (AC241_07330) | - | 1393132..1393350 (+) | 219 | WP_050843000.1 | hypothetical protein | - |
| AC241_RS07340 (AC241_07335) | - | 1393789..1393977 (+) | 189 | WP_050843002.1 | hypothetical protein | - |
| AC241_RS07345 (AC241_07340) | - | 1394044..1394919 (+) | 876 | WP_050843004.1 | hypothetical protein | - |
| AC241_RS07350 (AC241_07345) | - | 1395017..1395319 (+) | 303 | WP_050844811.1 | hypothetical protein | - |
| AC241_RS07355 (AC241_07350) | - | 1395306..1395518 (+) | 213 | WP_050843006.1 | hypothetical protein | - |
| AC241_RS07360 (AC241_07355) | - | 1395655..1395909 (+) | 255 | WP_050843008.1 | hypothetical protein | - |
| AC241_RS07365 (AC241_07360) | - | 1395902..1396255 (+) | 354 | WP_050843010.1 | hypothetical protein | - |
| AC241_RS35865 (AC241_07370) | - | 1396435..1396611 (+) | 177 | WP_050844812.1 | helix-turn-helix domain-containing protein | - |
| AC241_RS07375 (AC241_07375) | - | 1396616..1396843 (+) | 228 | WP_050843012.1 | hypothetical protein | - |
| AC241_RS07380 (AC241_07380) | - | 1396846..1397181 (+) | 336 | WP_050843014.1 | HNH endonuclease | - |
| AC241_RS07385 (AC241_07385) | - | 1397334..1397690 (+) | 357 | WP_050843017.1 | hypothetical protein | - |
| AC241_RS07390 (AC241_07390) | - | 1397687..1399342 (+) | 1656 | WP_050843019.1 | terminase TerL endonuclease subunit | - |
| AC241_RS07395 (AC241_07395) | - | 1399347..1400513 (+) | 1167 | WP_050843021.1 | phage portal protein | - |
| AC241_RS07400 (AC241_07400) | - | 1400497..1401279 (+) | 783 | WP_050843023.1 | head maturation protease, ClpP-related | - |
| AC241_RS07405 (AC241_07405) | - | 1401283..1402434 (+) | 1152 | WP_050843024.1 | phage major capsid protein | - |
| AC241_RS07410 (AC241_07410) | - | 1402440..1402733 (+) | 294 | WP_050843026.1 | hypothetical protein | - |
| AC241_RS07415 (AC241_07415) | - | 1402735..1403088 (+) | 354 | WP_030028310.1 | phage head closure protein | - |
| AC241_RS07420 (AC241_07420) | - | 1403090..1403434 (+) | 345 | WP_050843028.1 | HK97 gp10 family phage protein | - |
| AC241_RS07425 (AC241_07425) | - | 1403431..1403760 (+) | 330 | WP_050843030.1 | hypothetical protein | - |
| AC241_RS07430 (AC241_07430) | - | 1403761..1404357 (+) | 597 | WP_016124651.1 | major tail protein | - |
| AC241_RS07435 (AC241_07435) | - | 1404362..1404724 (+) | 363 | WP_050843032.1 | hypothetical protein | - |
| AC241_RS07440 (AC241_07440) | - | 1404955..1408575 (+) | 3621 | WP_050843034.1 | hypothetical protein | - |
| AC241_RS07445 (AC241_07445) | - | 1408617..1410092 (+) | 1476 | WP_050843037.1 | distal tail protein Dit | - |
| AC241_RS07450 (AC241_07450) | - | 1410089..1414180 (+) | 4092 | WP_050843039.1 | phage tail spike protein | - |
| AC241_RS07455 (AC241_07455) | - | 1414470..1414778 (-) | 309 | WP_050843041.1 | hypothetical protein | - |
| AC241_RS07460 (AC241_07460) | - | 1414979..1415203 (+) | 225 | WP_050843043.1 | hypothetical protein | - |
| AC241_RS07465 (AC241_07465) | - | 1415280..1415714 (+) | 435 | WP_050843045.1 | holin family protein | - |
| AC241_RS07470 (AC241_07470) | - | 1415704..1416636 (+) | 933 | WP_050843047.1 | N-acetylmuramoyl-L-alanine amidase | - |
Sequence
Protein
Download Length: 92 a.a. Molecular weight: 10114.73 Da Isoelectric Point: 5.1693
>NTDB_id=151383 AC241_RS07260 WP_050842979.1 1386483..1386761(+) (abrB) [Bacillus thuringiensis strain HS18-1]
MKNTGVVRKVDELGRLVIPVELRRTLGIAEGTALDFHVDGENIILRKPEKSCFVTGEVSESNIELLGGRMVLSKEGASEL
LDLLQKNVMEHA
MKNTGVVRKVDELGRLVIPVELRRTLGIAEGTALDFHVDGENIILRKPEKSCFVTGEVSESNIELLGGRMVLSKEGASEL
LDLLQKNVMEHA
Nucleotide
Download Length: 279 bp
>NTDB_id=151383 AC241_RS07260 WP_050842979.1 1386483..1386761(+) (abrB) [Bacillus thuringiensis strain HS18-1]
ATGAAAAATACAGGTGTTGTAAGAAAAGTGGACGAGCTAGGGCGATTAGTAATTCCAGTTGAATTGCGCAGGACCTTAGG
TATTGCTGAAGGGACAGCGTTAGACTTTCATGTTGACGGAGAAAACATCATTTTAAGAAAACCAGAAAAGTCATGTTTTG
TAACAGGTGAAGTGTCTGAATCCAACATCGAATTGTTAGGCGGCCGAATGGTTTTGAGTAAGGAAGGGGCAAGTGAGTTA
TTGGACCTTCTTCAAAAGAATGTGATGGAACATGCCTAA
ATGAAAAATACAGGTGTTGTAAGAAAAGTGGACGAGCTAGGGCGATTAGTAATTCCAGTTGAATTGCGCAGGACCTTAGG
TATTGCTGAAGGGACAGCGTTAGACTTTCATGTTGACGGAGAAAACATCATTTTAAGAAAACCAGAAAAGTCATGTTTTG
TAACAGGTGAAGTGTCTGAATCCAACATCGAATTGTTAGGCGGCCGAATGGTTTTGAGTAAGGAAGGGGCAAGTGAGTTA
TTGGACCTTCTTCAAAAGAATGTGATGGAACATGCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
63.218 |
94.565 |
0.598 |