Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AC241_RS06510 Genome accession   NZ_CP012099
Coordinates   1257968..1258291 (-) Length   107 a.a.
NCBI ID   WP_000578866.1    Uniprot ID   A0A9X6QKV7
Organism   Bacillus thuringiensis strain HS18-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252968..1263291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC241_RS06485 (AC241_06480) - 1253249..1254535 (+) 1287 WP_050842910.1 D-alanyl-D-alanine carboxypeptidase family protein -
  AC241_RS06490 (AC241_06485) sipW 1254732..1255301 (+) 570 WP_000767802.1 signal peptidase I SipW -
  AC241_RS06495 (AC241_06490) - 1255364..1255951 (+) 588 WP_000172852.1 CalY family protein -
  AC241_RS06500 (AC241_06495) - 1256086..1256910 (+) 825 WP_050842912.1 DUF4047 domain-containing protein -
  AC241_RS06505 (AC241_06500) calY 1257299..1257892 (+) 594 WP_016082403.1 biofilm matrix protein CalY -
  AC241_RS06510 (AC241_06505) sinR 1257968..1258291 (-) 324 WP_000578866.1 helix-turn-helix domain-containing protein Regulator
  AC241_RS06515 (AC241_06510) - 1258371..1258505 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  AC241_RS06520 (AC241_06515) inhA1 1258848..1261244 (+) 2397 WP_050842914.1 M6 family metalloprotease immune inhibitor InhA1 -
  AC241_RS06525 (AC241_06520) - 1261416..1262783 (+) 1368 WP_050842916.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12376.26 Da        Isoelectric Point: 9.9412

>NTDB_id=151382 AC241_RS06510 WP_000578866.1 1257968..1258291(-) (sinR) [Bacillus thuringiensis strain HS18-1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDEKTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=151382 AC241_RS06510 WP_000578866.1 1257968..1258291(-) (sinR) [Bacillus thuringiensis strain HS18-1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAAAAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment