Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AC241_RS00530 Genome accession   NZ_CP012099
Coordinates   97744..99120 (+) Length   458 a.a.
NCBI ID   WP_016084034.1    Uniprot ID   A0A9X6QR50
Organism   Bacillus thuringiensis strain HS18-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92744..104120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC241_RS00510 (AC241_00510) ctsR 92941..93402 (+) 462 WP_001244560.1 transcriptional regulator CtsR -
  AC241_RS00515 (AC241_00515) - 93573..94121 (+) 549 WP_016084037.1 UvrB/UvrC motif-containing protein -
  AC241_RS00520 (AC241_00520) - 94126..95190 (+) 1065 WP_000050837.1 protein arginine kinase -
  AC241_RS00525 (AC241_00525) clpC 95213..97648 (+) 2436 WP_016084035.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  AC241_RS00530 (AC241_00530) radA 97744..99120 (+) 1377 WP_016084034.1 DNA repair protein RadA Machinery gene
  AC241_RS00535 (AC241_00535) disA 99124..100197 (+) 1074 WP_016084033.1 DNA integrity scanning diadenylate cyclase DisA -
  AC241_RS00540 (AC241_00540) - 100358..101461 (+) 1104 WP_050842390.1 PIN/TRAM domain-containing protein -
  AC241_RS00545 (AC241_00545) ispD 101478..102158 (+) 681 WP_016084031.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AC241_RS00550 (AC241_00550) ispF 102275..102751 (+) 477 WP_050842392.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49869.57 Da        Isoelectric Point: 6.9053

>NTDB_id=151368 AC241_RS00530 WP_016084034.1 97744..99120(+) (radA) [Bacillus thuringiensis strain HS18-1]
MAKKKTKFICQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQTEVTKPRRLTEVETKSEARIETEFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIA
AHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPADAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRVIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=151368 AC241_RS00530 WP_016084034.1 97744..99120(+) (radA) [Bacillus thuringiensis strain HS18-1]
ATGGCTAAAAAGAAAACGAAATTTATATGTCAAGAATGTGGTTATCAGTCACCAAAATATATGGGTAAATGTCCTGGATG
TGGTCAATGGAATACACTTGTTGAAGAAATGGAGCCAGTTGTATCATCCAGGCGCCTTAATTACGCGAATGCAATTCAAA
CGGAAGTAACAAAACCAAGACGTCTTACCGAAGTAGAAACAAAGTCTGAGGCACGTATTGAAACGGAATTTCAAGAGTTT
AACCGTGTGCTTGGTGGCGGAATTGTAGATGGGTCCTTAGTACTTATTGGTGGAGACCCTGGGATTGGAAAATCAACATT
ACTATTACAGATTTCATCGCAATTAGCAGATTCTTCATATGATGTATTATACATATCAGGTGAGGAGTCGGCAAAGCAGA
TTAAACTTCGTGCAGATCGTTTGCATGTAAAGGGTAGCAATCTATTTGTTGTAGCAGAGACAGACCTGCAGCGTATTGCA
GCACATATTGAAGAGATGAATCCAGCTTTTGTTGTTATTGATTCTATTCAAACGATACATTTACCTGAAGTGACGTCGGC
CCCAGGAAGTGTGGCACAAGTACGTGAATGCACAGCAGAATTAATGAAACTTGCAAAAACAAAAGGAATCCCTATTTTCA
TTGTTGGGCATGTGACAAAAGAAGGAGCAATTGCAGGACCTCGTATGTTAGAACATATGGTCGATGCAGTTCTTTATTTT
GAAGGAGACCGACACCATACGTATCGTATTTTACGAGCTGTGAAGAACCGTTTTGGTTCCACGAATGAAATGGGTATCTT
TGAAATGAAAGAGCTTGGTCTTGCGGAAGTTTTAAATCCTTCTGAAATCTTCCTTGAGGAAAGGCCGGTTGGTGTTGCAG
GATCAACAGTAGTTGCTTCAATGGAAGGAACAAGACCGGTTTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAATCCTCGAAGAATGGCGACAGGAATTGATCATAACCGTGTTTCGCTTATTATGGCAGTATTAGAAAAAAGAACAGG
TTTACTATTGCAAAATCAAGATGCATATTTAAAAGTAGCTGGTGGTTTGAAATTAGACGAACCGGCAATTGATTTAGCGG
TGGCTTTAAGTATAGCCTCAAGTTTTAGGGATAAATCTACGGCACCAGCTGATGCAGTAATAGGAGAAGTAGGATTAACT
GGAGAAATAAGAAGAGTATCAAGAATTGAACAACGTGTACAAGAAGCAGCTAAATTAGGATTTCAACGTGTAATTATTCC
TAGAAAAAACTTAGGAGGATGGACAATTCCGGATGGGATTGAGGTTGTAGGTGTTTCTAATTTAGGGGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

AAA domain (AAA_25)

(60-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.163

100

0.753
  radA Streptococcus pneumoniae Rx1

64.238

98.908

0.635
  radA Streptococcus pneumoniae D39

64.238

98.908

0.635
  radA Streptococcus pneumoniae R6

64.238

98.908

0.635
  radA Streptococcus pneumoniae TIGR4

64.238

98.908

0.635
  radA Streptococcus mitis SK321

64.238

98.908

0.635
  radA Streptococcus mitis NCTC 12261

64.018

98.908

0.633

Multiple sequence alignment