Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AC241_RS00220 Genome accession   NZ_CP012099
Coordinates   40632..40916 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain HS18-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35632..45916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC241_RS00185 (AC241_00185) tmk 35824..36450 (+) 627 WP_016079527.1 dTMP kinase -
  AC241_RS00190 (AC241_00190) holB 36486..37469 (+) 984 WP_016079526.1 DNA polymerase III subunit delta' -
  AC241_RS00195 (AC241_00195) - 37475..38302 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  AC241_RS00200 (AC241_00200) yabA 38317..38667 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  AC241_RS00205 (AC241_00205) - 38750..39490 (+) 741 WP_043935441.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AC241_RS00210 (AC241_00210) - 39477..39767 (+) 291 WP_043935440.1 GIY-YIG nuclease family protein -
  AC241_RS00215 (AC241_00215) rsmI 39736..40611 (+) 876 WP_043935439.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AC241_RS00220 (AC241_00220) abrB 40632..40916 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AC241_RS00225 (AC241_00225) metG 41401..43383 (+) 1983 WP_016079524.1 methionine--tRNA ligase -
  AC241_RS00230 (AC241_00230) - 43550..44317 (+) 768 WP_043935438.1 TatD family hydrolase -
  AC241_RS00235 (AC241_00235) rnmV 44533..45090 (+) 558 WP_000692837.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=151366 AC241_RS00220 WP_000843036.1 40632..40916(-) (abrB) [Bacillus thuringiensis strain HS18-1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=151366 AC241_RS00220 WP_000843036.1 40632..40916(-) (abrB) [Bacillus thuringiensis strain HS18-1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment