Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AC241_RS00020 Genome accession   NZ_CP012099
Coordinates   3168..4295 (+) Length   375 a.a.
NCBI ID   WP_016079537.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HS18-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC241_RS00005 (AC241_00005) dnaA 151..1491 (+) 1341 WP_000428018.1 chromosomal replication initiator protein DnaA -
  AC241_RS00010 (AC241_00010) dnaN 1670..2815 (+) 1146 WP_016079538.1 DNA polymerase III subunit beta -
  AC241_RS00015 (AC241_00015) yaaA 2943..3155 (+) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  AC241_RS00020 (AC241_00020) recF 3168..4295 (+) 1128 WP_016079537.1 DNA replication/repair protein RecF Machinery gene
  AC241_RS00025 (AC241_00025) gyrB 4335..6257 (+) 1923 WP_000435980.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AC241_RS00030 (AC241_00030) gyrA 6346..8817 (+) 2472 WP_001282866.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43290.60 Da        Isoelectric Point: 6.7807

>NTDB_id=151364 AC241_RS00020 WP_016079537.1 3168..4295(+) (recF) [Bacillus thuringiensis strain HS18-1]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=151364 AC241_RS00020 WP_016079537.1 3168..4295(+) (recF) [Bacillus thuringiensis strain HS18-1]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGTTGGGATGAAGATTTTGGTCAAATTAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGCCAGTA
CATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTGTATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCAAAAATACTACAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAGATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGCTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment