Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACR54_RS22485 Genome accession   NZ_CP012076
Coordinates   4781699..4783135 (-) Length   478 a.a.
NCBI ID   WP_080666485.1    Uniprot ID   -
Organism   Bordetella hinzii strain F582     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4776699..4788135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACR54_RS22460 (ACR54_04530) - 4777814..4778497 (+) 684 WP_029577791.1 hypothetical protein -
  ACR54_RS22465 (ACR54_04531) bfr 4778561..4779037 (-) 477 WP_029577792.1 bacterioferritin -
  ACR54_RS22470 (ACR54_04532) - 4779351..4780262 (-) 912 WP_029577793.1 DMT family transporter -
  ACR54_RS22475 (ACR54_04533) - 4780370..4781239 (+) 870 WP_029577794.1 LysR family transcriptional regulator -
  ACR54_RS22480 (ACR54_04534) - 4781300..4781578 (-) 279 WP_029577795.1 bacterioferritin-associated ferredoxin -
  ACR54_RS22485 (ACR54_04535) rpoN/rpoN1 4781699..4783135 (-) 1437 WP_080666485.1 RNA polymerase factor sigma-54 Machinery gene
  ACR54_RS22490 (ACR54_04536) - 4783134..4783823 (+) 690 WP_029577797.1 hypothetical protein -
  ACR54_RS22495 (ACR54_04537) leuA 4784199..4785908 (+) 1710 WP_029577798.1 2-isopropylmalate synthase -
  ACR54_RS22500 (ACR54_04538) - 4785997..4787286 (-) 1290 WP_029577799.1 amidase -
  ACR54_RS23885 - 4787524..4787736 (+) 213 WP_235442456.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52715.12 Da        Isoelectric Point: 4.9223

>NTDB_id=151103 ACR54_RS22485 WP_080666485.1 4781699..4783135(-) (rpoN/rpoN1) [Bordetella hinzii strain F582]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAEISQALAENPLLERDESPADQVDSDPQREASVDHEDAA
PDTELRFDEMPGSGGVYPDDDIDTPARDDTLREHLLLQLSLTRAAPRDAALATLLIDELDDNGYLGSPLDEILQWLPPEL
EVEEDELRAALSLLQSFDPPGIGARDMAECLLLQLRQPDIGRLPEAAQPAVLACARQICMQHLALLATGNPARLREILRV
DEATLRAARALIVRLEPRPGRAWTAPAADYAVPDVLVRKTRQGWQAVLNSAVMPRLQINGLYAQMLSNQREAAYAGLNAQ
LQQARWMIRNVEQRFDTILRVAQAIVAHQAEFFSRGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELKRF
FGTGVATDSGDSASATAVQAHIRQMVAEENRARPLSDSQIMERLASQGIVIARRTVAKYREALRIAPAAVRKAQAAAR

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=151103 ACR54_RS22485 WP_080666485.1 4781699..4783135(-) (rpoN/rpoN1) [Bordetella hinzii strain F582]
ATGCAAAATATTGTACCTATGACTCGTCCCGCCTTAGAACTTCGGCCCGGTCAGCATTTGACCCTGACCCCGCAGCTGCA
ACAGTCCATCCGGCTGCTGCAGCTCTCTTCGCTGGAGCTGGAGGCGGAAATCTCCCAGGCCCTGGCTGAAAATCCGTTGT
TGGAACGCGACGAAAGTCCGGCCGACCAGGTCGACAGCGACCCCCAGCGCGAAGCCAGCGTCGACCATGAGGACGCCGCC
CCGGACACCGAATTGCGCTTTGACGAGATGCCGGGCTCGGGCGGCGTCTATCCGGACGACGACATCGATACACCGGCGCG
CGATGACACGTTGCGCGAGCACCTGCTGCTGCAGCTGAGCCTGACGCGCGCCGCCCCGCGCGATGCCGCCCTGGCCACGC
TGCTCATCGACGAGCTGGATGACAACGGCTACCTGGGCTCGCCGCTCGACGAAATCCTGCAATGGCTGCCGCCCGAACTG
GAGGTCGAGGAGGACGAGCTGCGCGCGGCCTTGAGCCTGCTGCAATCCTTCGATCCGCCGGGCATCGGCGCGCGCGACAT
GGCCGAGTGCCTGCTCCTGCAGCTGCGCCAGCCCGATATCGGGCGCCTGCCCGAGGCCGCCCAGCCCGCGGTACTGGCCT
GTGCGCGGCAGATCTGCATGCAGCACCTGGCGCTGCTGGCCACCGGCAATCCGGCGCGGCTGCGCGAGATATTGCGGGTC
GACGAGGCCACGCTGCGCGCGGCGCGCGCGCTCATCGTGCGGCTGGAACCCCGCCCCGGCCGCGCCTGGACCGCGCCGGC
CGCGGACTATGCCGTGCCCGATGTGTTGGTGCGCAAGACCCGGCAGGGCTGGCAGGCCGTGCTCAACAGCGCGGTGATGC
CGCGCCTGCAGATCAACGGCCTGTATGCCCAGATGCTGTCCAACCAGCGCGAGGCGGCCTACGCAGGCCTGAATGCCCAG
CTGCAGCAGGCGCGCTGGATGATACGCAACGTCGAGCAGCGTTTTGACACCATCCTGCGGGTGGCCCAGGCCATCGTCGC
GCACCAGGCGGAGTTCTTCAGCCGCGGGCCCGCCGCCATGCGGCCGCTGATCCTCAAGGACATCGCGGGCGAGCTCGGCC
TGCACGAATCCACGATTTCGCGCGCCACGACGCAGAAGTACATGCTCACTCCGTTCGGCACGCTGGAGCTCAAGCGGTTT
TTCGGCACGGGCGTGGCGACCGATAGCGGCGACTCCGCCTCGGCCACGGCGGTGCAGGCCCATATCCGGCAGATGGTGGC
CGAGGAAAATCGGGCCAGGCCCCTGTCCGATAGCCAGATCATGGAGCGCCTGGCCAGCCAAGGCATCGTGATCGCCCGCC
GCACCGTGGCCAAGTACCGCGAGGCCCTGCGTATCGCCCCGGCGGCCGTGCGCAAGGCCCAGGCCGCGGCGCGCTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-472)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-302)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.198

100

0.531

Multiple sequence alignment