Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ADJ80_RS10550 Genome accession   NZ_CP012067
Coordinates   2297459..2297980 (-) Length   173 a.a.
NCBI ID   WP_050694065.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain W10433     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2292459..2302980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADJ80_RS10535 (ADJ80_10560) comQ 2295760..2296062 (-) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene
  ADJ80_RS10540 (ADJ80_10565) - 2296046..2296732 (-) 687 WP_050694063.1 DUF2572 family protein -
  ADJ80_RS10545 (ADJ80_10570) - 2296729..2297472 (-) 744 WP_050694064.1 PulJ/GspJ family protein -
  ADJ80_RS10550 (ADJ80_10575) comN 2297459..2297980 (-) 522 WP_050694065.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ADJ80_RS10570 (ADJ80_10595) pal 2298715..2299179 (-) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  ADJ80_RS10575 (ADJ80_10600) tolB 2299194..2300474 (-) 1281 WP_050694066.1 Tol-Pal system beta propeller repeat protein TolB -
  ADJ80_RS10580 (ADJ80_10605) tolA 2300510..2301754 (-) 1245 WP_050694067.1 cell envelope integrity protein TolA -
  ADJ80_RS10585 (ADJ80_10610) tolR 2301773..2302195 (-) 423 WP_050694068.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20297.42 Da        Isoelectric Point: 8.2303

>NTDB_id=151034 ADJ80_RS10550 WP_050694065.1 2297459..2297980(-) (comN) [Aggregatibacter aphrophilus strain W10433]
MQKGFTLLEILIALLIISVLLTLSLPAWQQYRQQNILQKEQQKLYIFLRQIQARVENSSDIWFLIANRHQMTQRWCLTAQ
IKSDKLCDCLNPQHCPQEVSAYFYYPTFEDTILISKRYYPFEFTRLSGIRNTASTACFVLQANHQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=151034 ADJ80_RS10550 WP_050694065.1 2297459..2297980(-) (comN) [Aggregatibacter aphrophilus strain W10433]
ATGCAGAAGGGATTTACCCTGTTAGAAATCTTGATTGCTCTGCTGATAATAAGTGTATTGCTAACATTGTCGCTTCCCGC
ATGGCAGCAGTATCGTCAGCAAAATATTTTGCAGAAAGAACAACAAAAGCTGTATATCTTCTTGCGTCAAATTCAGGCTC
GAGTGGAAAATTCATCCGATATTTGGTTTTTAATTGCCAACCGCCATCAAATGACGCAACGTTGGTGCCTCACTGCTCAA
ATTAAGAGTGACAAATTATGTGATTGCCTCAACCCGCAACATTGCCCGCAAGAGGTTTCCGCATATTTTTACTATCCTAC
ATTTGAAGACACCATATTAATCAGCAAGCGTTACTATCCTTTTGAATTTACCCGTTTGAGTGGTATTCGGAACACGGCGT
CAACAGCCTGTTTTGTGTTACAAGCGAATCATCAACGAACCCTATTTTCATTTTTTAATGTGGGTAGTTTGAAGTTAAAA
GATAACCAATCCTTAAGCGCCTGTGTTAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

58.58

97.688

0.572

Multiple sequence alignment