Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ADJ80_RS10535 Genome accession   NZ_CP012067
Coordinates   2295760..2296062 (-) Length   100 a.a.
NCBI ID   WP_005701125.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain W10433     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2290760..2301062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADJ80_RS10520 (ADJ80_10545) - 2291446..2291886 (+) 441 WP_050694062.1 DNA polymerase III subunit psi -
  ADJ80_RS10525 (ADJ80_10550) rimI 2291899..2292342 (+) 444 WP_005701123.1 ribosomal protein S18-alanine N-acetyltransferase -
  ADJ80_RS10530 (ADJ80_10555) recC 2292345..2295722 (-) 3378 WP_050694224.1 exodeoxyribonuclease V subunit gamma -
  ADJ80_RS10535 (ADJ80_10560) comQ 2295760..2296062 (-) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene
  ADJ80_RS10540 (ADJ80_10565) - 2296046..2296732 (-) 687 WP_050694063.1 DUF2572 family protein -
  ADJ80_RS10545 (ADJ80_10570) - 2296729..2297472 (-) 744 WP_050694064.1 PulJ/GspJ family protein -
  ADJ80_RS10550 (ADJ80_10575) comN 2297459..2297980 (-) 522 WP_050694065.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ADJ80_RS10570 (ADJ80_10595) pal 2298715..2299179 (-) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  ADJ80_RS10575 (ADJ80_10600) tolB 2299194..2300474 (-) 1281 WP_050694066.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11683.55 Da        Isoelectric Point: 10.7466

>NTDB_id=151033 ADJ80_RS10535 WP_005701125.1 2295760..2296062(-) (comQ) [Aggregatibacter aphrophilus strain W10433]
MISRLNFIRQKGMSLLSLLVALSLFSGIFLTFNQWGNAQRKSAVEIYQRFQGIQIAENQRQRQFLGLSCESEIYQNHIRF
QVVCRQNQVTVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=151033 ADJ80_RS10535 WP_005701125.1 2295760..2296062(-) (comQ) [Aggregatibacter aphrophilus strain W10433]
ATGATTTCACGCCTTAATTTTATTCGACAGAAAGGCATGAGCTTGCTGTCGTTGTTGGTGGCATTAAGTTTATTTAGCGG
CATTTTTCTCACGTTTAACCAATGGGGTAATGCACAACGTAAAAGTGCGGTGGAAATTTACCAACGTTTTCAAGGGATCC
AAATTGCCGAAAATCAACGGCAACGCCAGTTTCTTGGTTTGTCTTGTGAAAGTGAGATTTACCAAAATCATATTCGTTTT
CAGGTGGTTTGTCGGCAAAATCAGGTGACGGTGAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

55.319

94

0.52

Multiple sequence alignment