Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ADJ52_RS16970 Genome accession   NZ_CP012066
Coordinates   3742067..3742702 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain F9676     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3732615..3744334 3742067..3742702 within 0


Gene organization within MGE regions


Location: 3732615..3744334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADJ52_RS16925 (ADJ52_16925) - 3732615..3733307 (-) 693 WP_003104140.1 HAD-IA family hydrolase -
  ADJ52_RS16930 (ADJ52_16930) rluC 3733300..3734256 (-) 957 WP_003104143.1 23S rRNA pseudouridine(955/2504/2580) synthase RluC -
  ADJ52_RS16935 (ADJ52_16935) rne 3734833..3738006 (+) 3174 WP_017149172.1 ribonuclease E -
  ADJ52_RS16940 (ADJ52_16940) murB 3738165..3739184 (-) 1020 WP_034017434.1 UDP-N-acetylmuramate dehydrogenase -
  ADJ52_RS16945 (ADJ52_16945) - 3739181..3739645 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  ADJ52_RS16950 (ADJ52_16950) kdsB 3739645..3740409 (-) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ADJ52_RS16955 (ADJ52_16955) - 3740409..3740594 (-) 186 WP_003091157.1 Trm112 family protein -
  ADJ52_RS16960 (ADJ52_16960) lpxK 3740632..3741630 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  ADJ52_RS16965 (ADJ52_16965) - 3741630..3742070 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  ADJ52_RS16970 (ADJ52_16970) exbB 3742067..3742702 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=150995 ADJ52_RS16970 WP_003091163.1 3742067..3742702(-) (exbB) [Pseudomonas aeruginosa strain F9676]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=150995 ADJ52_RS16970 WP_003091163.1 3742067..3742702(-) (exbB) [Pseudomonas aeruginosa strain F9676]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGACGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment