Detailed information NTG0150940

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA11803_RS07965
• Genome accession: NZ_CP015003
• Coordinates: 1624849..1625853 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA11803
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1619849..1630853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA11803_RS07935 (PA11803_00201)	fghA	1619955..1620806 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
PA11803_RS07940 (PA11803_00202)	ispF	1620877..1621350 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA11803_RS07945 (PA11803_00203)	truD	1621347..1622414 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PA11803_RS07950 (PA11803_00204)	surE	1622402..1623151 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA11803_RS07955 (PA11803_06402)	-	1623167..1623805 (+)	639	WP_070410946.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA11803_RS07960 (PA11803_06486)	-	1623851..1624744 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA11803_RS07965 (PA11803_00207)	rpoS	1624849..1625853 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA11803_RS07970 (PA11803_00208)	fdxA	1626279..1626602 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PA11803_RS07975 (PA11803_00209)	mutS	1626669..1629236 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PA11803_RS07980 (PA11803_00210)	-	1629362..1630369 (-)	1008	WP_003117491.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=150940 PA11803_RS07965 WP_003113871.1 1624849..1625853(+) (rpoS) [Pseudomonas aeruginosa strain PA11803]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=150940 PA11803_RS07965 WP_003113871.1 1624849..1625853(+) (rpoS) [Pseudomonas aeruginosa strain PA11803]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653