Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AC806_RS08815 Genome accession   NZ_CP012047
Coordinates   1840086..1841903 (-) Length   605 a.a.
NCBI ID   WP_069029153.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain MJ4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835086..1846903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC806_RS08790 (AC806_08770) mgtE 1835396..1836760 (-) 1365 WP_041591768.1 magnesium transporter -
  AC806_RS08795 (AC806_08775) - 1836766..1837668 (-) 903 WP_069029152.1 RluA family pseudouridine synthase -
  AC806_RS08800 (AC806_08780) - 1837801..1838607 (-) 807 WP_061840320.1 NAD kinase -
  AC806_RS08805 (AC806_08785) - 1838600..1839274 (-) 675 WP_014124074.1 GTP pyrophosphokinase -
  AC806_RS08810 (AC806_08790) - 1839429..1840004 (+) 576 WP_061840319.1 CYTH domain-containing protein -
  AC806_RS08815 (AC806_08795) pepF 1840086..1841903 (-) 1818 WP_069029153.1 oligoendopeptidase F Regulator
  AC806_RS08820 (AC806_08800) - 1841991..1842959 (-) 969 WP_069029154.1 competence protein CoiA -
  AC806_RS08825 (AC806_08805) - 1843070..1843786 (-) 717 WP_061840316.1 adaptor protein MecA -
  AC806_RS08830 (AC806_08810) spxA 1843935..1844333 (-) 399 WP_014124069.1 transcriptional regulator SpxA -
  AC806_RS08835 (AC806_08815) - 1844493..1846204 (-) 1712 Protein_1755 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70001.11 Da        Isoelectric Point: 4.7775

>NTDB_id=150845 AC806_RS08815 WP_069029153.1 1840086..1841903(-) (pepF) [Tetragenococcus halophilus strain MJ4]
MSEPKKLPKRDEVAENLTWDLTKIFKDDQAFEKAFSALQEKLRYADSYRGTLGDGSQAFLAALEYLLDVSRQLETVYVYS
HLKNDQDTSNTIYQALNSRAESLVTQADEKLSFFEPELLSLSDERIWQYFKDEPKLEIYRHFVEQIVANRAHVLPKEQEA
LLAGAGEIFGASSNTFSIMNNADFVFPVIEDENGEKVQLSHGVYGQLMESTDRLVRENAFKGLYSVYKQFGNTLASTLNS
HIKTHNYQAKVRHYHSAREAALSSNHIPESVYDHLVDVVNKNLNLLHRYMGLRKRLLQVEKLHMYDVYTPLLGEAPISFT
YDQAVDKAFEVLAPMGEEYLSVVKKAFDERWIDVVENQGKRSGAYSSGTYDTNPYILLNWHDTLDHLFTLVHEMGHSVHS
YFTQNNQPYVYGDYSIFLAEIASTTNENILTEHLLQTENDPRVRAYILNHYLDGFKGTVFRQTQFAEFEHFMHTEDAKGT
PLTSEFLNEHYGELNRRYYGDEMEDDPEIHLEWSRIPHFYYNYYVFQYATGFSAASALSQKILSEDSSALDRYLTYLKSG
DSDYPIEVMKKAGVDMTKSDYLEDAMHVFEERLNELELLVDELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=150845 AC806_RS08815 WP_069029153.1 1840086..1841903(-) (pepF) [Tetragenococcus halophilus strain MJ4]
ATGTCAGAACCTAAAAAATTACCTAAAAGAGACGAAGTGGCAGAAAATTTGACTTGGGATTTAACAAAAATCTTTAAAGA
TGACCAAGCATTTGAAAAAGCTTTTAGCGCGCTACAAGAAAAACTGCGGTATGCCGATTCCTATAGAGGAACTCTAGGAG
ATGGCTCACAAGCATTTCTAGCTGCACTTGAATATTTATTAGATGTTTCTCGTCAATTAGAGACTGTCTATGTTTATAGT
CATTTAAAAAATGACCAAGATACCTCAAATACAATTTATCAAGCGCTTAATTCTAGAGCAGAGTCTTTGGTAACACAAGC
AGATGAAAAATTATCTTTTTTCGAACCGGAATTATTATCGTTAAGTGATGAAAGGATTTGGCAGTATTTTAAAGACGAAC
CAAAACTTGAAATTTATCGACATTTTGTTGAACAAATCGTAGCAAATCGTGCCCACGTTTTGCCAAAAGAACAAGAAGCT
TTATTAGCAGGCGCTGGAGAGATTTTTGGTGCTTCTAGTAACACTTTTTCTATTATGAACAATGCTGATTTTGTTTTTCC
TGTCATTGAAGATGAAAATGGAGAAAAAGTACAGCTTTCTCATGGTGTTTATGGACAATTAATGGAAAGCACTGATCGTT
TAGTGCGTGAGAATGCTTTTAAAGGACTATATAGTGTATACAAGCAGTTTGGTAACACTCTTGCTTCTACACTGAATTCA
CATATTAAAACACATAATTATCAAGCAAAAGTGCGCCATTACCATTCAGCTAGAGAAGCTGCTTTATCAAGCAACCATAT
TCCAGAAAGCGTTTATGATCATTTAGTAGATGTGGTCAATAAAAACTTAAACCTTCTTCATCGCTATATGGGACTTAGGA
AACGTTTATTACAAGTGGAAAAATTGCATATGTATGATGTTTACACGCCACTTTTAGGCGAAGCTCCTATTAGTTTTACT
TATGACCAGGCGGTAGATAAAGCGTTTGAAGTACTAGCGCCTATGGGAGAAGAGTATTTAAGTGTCGTGAAAAAGGCCTT
TGATGAACGTTGGATCGATGTTGTAGAAAATCAAGGAAAACGTAGCGGTGCTTATTCTTCAGGTACTTATGATACCAATC
CTTATATTTTATTAAATTGGCATGATACATTGGATCATTTATTTACCCTGGTACATGAAATGGGGCATAGTGTTCATAGT
TACTTTACCCAAAATAATCAACCTTATGTATATGGAGATTACTCAATTTTCTTAGCAGAGATTGCTTCAACTACCAATGA
AAATATCTTGACTGAACATCTTTTACAAACAGAAAATGACCCACGCGTTCGGGCATATATATTAAATCACTATTTAGACG
GTTTTAAAGGTACAGTTTTCCGTCAAACACAATTTGCGGAGTTTGAGCATTTTATGCACACTGAGGACGCTAAAGGCACA
CCATTAACAAGTGAGTTTTTAAATGAGCATTATGGAGAGTTGAATAGACGATATTATGGTGATGAAATGGAAGACGATCC
AGAAATACATCTTGAATGGTCGCGTATTCCTCATTTTTATTATAATTACTATGTGTTCCAATATGCGACAGGTTTTTCTG
CTGCTTCTGCCTTGTCACAAAAAATCTTATCAGAAGACTCGAGTGCCTTGGATCGTTATTTGACCTATCTAAAATCTGGT
GATAGTGATTATCCTATCGAAGTGATGAAAAAAGCTGGAGTGGATATGACAAAATCGGATTATTTAGAAGATGCGATGCA
TGTTTTTGAAGAGCGGTTAAATGAGTTAGAACTACTCGTTGATGAATTAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.312

98.017

0.542

Multiple sequence alignment