Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA1088_RS12755 Genome accession   NZ_CP015001
Coordinates   2717997..2718491 (-) Length   164 a.a.
NCBI ID   WP_009459650.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA1088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2712997..2723491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA1088_RS12730 (PA1088_02540) - 2713152..2714672 (-) 1521 WP_019726345.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  PA1088_RS12735 (PA1088_02541) - 2714688..2715044 (-) 357 WP_009459645.1 hypothetical protein -
  PA1088_RS12740 (PA1088_02542) - 2715041..2716435 (-) 1395 WP_009459646.1 integrating conjugative element protein -
  PA1088_RS12745 (PA1088_02543) - 2716445..2717392 (-) 948 WP_019726343.1 TIGR03756 family integrating conjugative element protein -
  PA1088_RS12750 (PA1088_02544) - 2717389..2717835 (-) 447 WP_009459649.1 TIGR03757 family integrating conjugative element protein -
  PA1088_RS12755 (PA1088_02545) radC 2717997..2718491 (-) 495 WP_009459650.1 RadC family protein Machinery gene
  PA1088_RS12760 (PA1088_02546) - 2718667..2719431 (-) 765 WP_009459652.1 DsbA family protein -
  PA1088_RS12765 (PA1088_02547) - 2719445..2722312 (-) 2868 WP_019726341.1 conjugative transfer ATPase -
  PA1088_RS12770 (PA1088_02548) - 2722312..2722752 (-) 441 WP_009459662.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17963.68 Da        Isoelectric Point: 5.9735

>NTDB_id=150759 PA1088_RS12755 WP_009459650.1 2717997..2718491(-) (radC) [Pseudomonas aeruginosa strain PA1088]
MSFVVNDSCPESLSVTAAQHEDWIIQQAIVLLERRVFKAGPCLSRPAAVRDYLRVKLVAEPNEIFAAVFLDSMHQVLAYE
PLFRGTINSTSVYPRVVVQRVLELNAAAVVFAHQHPSGISEPSSADRVLTQQLQAALALIDVRVLDHIIVGQGSPFSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=150759 PA1088_RS12755 WP_009459650.1 2717997..2718491(-) (radC) [Pseudomonas aeruginosa strain PA1088]
ATGTCTTTTGTCGTCAACGACTCCTGCCCGGAGTCGCTTTCCGTCACCGCTGCCCAACACGAGGACTGGATCATCCAGCA
AGCCATCGTGCTGCTGGAGAGGCGGGTTTTCAAAGCTGGACCGTGCCTCAGCCGACCGGCCGCTGTGCGGGACTATCTGC
GCGTGAAACTGGTCGCTGAACCCAACGAGATATTCGCCGCTGTGTTCCTGGACAGCATGCACCAGGTGCTGGCCTACGAG
CCATTGTTCAGGGGCACGATCAACTCGACTTCTGTTTATCCACGTGTCGTCGTACAGCGTGTGCTGGAGTTGAACGCCGC
CGCGGTGGTCTTCGCGCACCAGCACCCCTCGGGCATCTCCGAGCCGTCGAGCGCGGATCGTGTGCTGACCCAGCAACTGC
AGGCCGCGCTGGCGCTCATCGATGTACGGGTACTGGATCACATCATCGTAGGCCAAGGTTCCCCGTTCTCCTTTGCGGAG
TCAGGCCTGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

42.466

89.024

0.378

Multiple sequence alignment