Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PA7790_RS29800 Genome accession   NZ_CP014999
Coordinates   6369387..6369911 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA7790     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6364387..6374911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA7790_RS29785 (PA7790_05078) aroB 6365503..6366609 (-) 1107 WP_019726985.1 3-dehydroquinate synthase -
  PA7790_RS29790 (PA7790_05079) aroK 6366659..6367177 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PA7790_RS29795 (PA7790_05080) pilQ 6367189..6369333 (-) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  PA7790_RS29800 (PA7790_05081) comL/pilP 6369387..6369911 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PA7790_RS29805 (PA7790_05082) pilO 6369908..6370531 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PA7790_RS29810 (PA7790_05083) pilN 6370528..6371124 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PA7790_RS29815 (PA7790_05084) pilM 6371124..6372188 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PA7790_RS29820 (PA7790_05085) - 6372373..6374844 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=150697 PA7790_RS29800 WP_003095836.1 6369387..6369911(-) (comL/pilP) [Pseudomonas aeruginosa strain PA7790]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=150697 PA7790_RS29800 WP_003095836.1 6369387..6369911(-) (comL/pilP) [Pseudomonas aeruginosa strain PA7790]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362