Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABN16_RS11140 Genome accession   NZ_CP012033
Coordinates   2465690..2467498 (+) Length   602 a.a.
NCBI ID   WP_048735784.1    Uniprot ID   -
Organism   Levilactobacillus koreensis strain 26-25     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2455515..2469166 2465690..2467498 within 0


Gene organization within MGE regions


Location: 2455515..2469166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN16_RS11090 (ABN16_11100) - 2455515..2456489 (+) 975 WP_048735776.1 3'-5' exoribonuclease YhaM family protein -
  ABN16_RS11095 (ABN16_11105) ltrA 2457016..2458398 (+) 1383 WP_048731898.1 group II intron reverse transcriptase/maturase -
  ABN16_RS11100 (ABN16_11110) - 2458703..2459617 (-) 915 WP_048735777.1 peptidylprolyl isomerase PrsA -
  ABN16_RS11105 (ABN16_11115) - 2459730..2460050 (-) 321 WP_048735778.1 hypothetical protein -
  ABN16_RS11110 (ABN16_11120) - 2460054..2460512 (-) 459 WP_082153279.1 HIT family protein -
  ABN16_RS11115 (ABN16_11125) - 2460855..2461589 (+) 735 WP_048735779.1 ABC transporter ATP-binding protein -
  ABN16_RS11120 (ABN16_11130) - 2461586..2462812 (+) 1227 WP_048735780.1 ABC transporter permease -
  ABN16_RS11125 (ABN16_11135) - 2462874..2463665 (+) 792 WP_048735781.1 phosphotransferase family protein -
  ABN16_RS11130 (ABN16_11140) trmB 2463746..2464396 (+) 651 WP_048735782.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABN16_RS11135 (ABN16_11145) - 2464529..2465626 (+) 1098 WP_048735783.1 competence protein CoiA -
  ABN16_RS11140 (ABN16_11150) pepF 2465690..2467498 (+) 1809 WP_048735784.1 oligoendopeptidase F Regulator
  ABN16_RS11145 (ABN16_11155) - 2467800..2468318 (+) 519 WP_048732983.1 helix-turn-helix domain-containing protein -
  ABN16_RS11150 (ABN16_11160) - 2468345..2469166 (+) 822 WP_048732984.1 IS3 family transposase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67162.87 Da        Isoelectric Point: 4.8019

>NTDB_id=150695 ABN16_RS11140 WP_048735784.1 2465690..2467498(+) (pepF) [Levilactobacillus koreensis strain 26-25]
MKQIPARSAVPTELTWDLTPIFPDDAAFKAAVSDVQQAAKQAAELKGQLAKSGQALYQVTTTVFDLNRQLERAYVYASLK
NDQDTGDANAQALSGQADNLIATVSSATSWFEPEVLGLPASDLQALIDAEPKLAAYQHYFDVLGQQRDHTLSAAEEKLLA
GASDIFAASSKTYSVLSDADLKFPVVQDEEGNDVQLSEGLYGVLLQSTTPSVRKQAFEALYSVYQQFRHTFASTLSSEVK
THNFGAEVRHYGSAREAAMSANNVPAVVYDTLVKSVNAHLDSLHRYVGLRKEILGLEDLHFYDLYTPITGEPSLSYTYEE
AQQEALKALAVLGPDYVANVQKMFDSRAIDVVENKGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPQVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQAAAGETLT
ADFMSKFYGDLNARYYGDNLAKDPQIADEWTRIPHFYYNYYVYQYATGFAAATTLSQRILSGDAAKRDAYLTYLKSGSSA
LPLDVMRKAGVDMTQPDYLETAFATFDKRLAEFNELAHQLKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=150695 ABN16_RS11140 WP_048735784.1 2465690..2467498(+) (pepF) [Levilactobacillus koreensis strain 26-25]
ATGAAGCAAATTCCCGCACGTTCAGCGGTCCCAACCGAGTTAACCTGGGACCTGACCCCAATTTTCCCCGATGACGCAGC
TTTTAAGGCCGCCGTTAGCGATGTCCAGCAGGCAGCCAAGCAAGCAGCTGAGTTAAAAGGCCAATTGGCTAAGAGTGGCC
AAGCACTTTACCAAGTCACCACCACGGTCTTTGACTTGAATCGTCAGTTGGAGCGGGCATACGTGTACGCCTCTCTGAAG
AATGATCAAGACACTGGCGATGCCAACGCACAAGCCTTGTCTGGTCAAGCAGACAACTTGATTGCAACGGTCTCGTCTGC
AACCTCTTGGTTTGAACCCGAAGTTCTAGGGTTGCCAGCATCAGATCTGCAAGCCTTGATCGATGCGGAACCAAAGTTAG
CGGCGTATCAACACTACTTTGATGTGTTAGGTCAACAACGCGACCACACCTTATCCGCTGCCGAGGAAAAATTGTTGGCA
GGCGCTAGTGATATTTTTGCGGCCTCATCGAAGACGTACAGTGTCTTAAGCGATGCCGACTTGAAGTTCCCCGTCGTTCA
GGATGAAGAGGGCAACGACGTTCAATTGTCAGAAGGCCTTTATGGGGTCTTACTGCAGTCGACTACGCCTAGTGTTCGTA
AGCAGGCTTTTGAGGCACTTTACAGCGTCTACCAACAATTCCGGCATACGTTTGCTTCAACGCTGTCTAGCGAGGTTAAA
ACGCATAATTTCGGCGCTGAGGTTCGCCACTATGGCAGTGCGCGTGAAGCAGCCATGAGTGCGAACAACGTTCCTGCCGT
TGTGTATGATACCCTGGTCAAATCAGTCAACGCCCATTTGGATTCCTTACACCGTTACGTTGGGTTGCGTAAGGAAATCT
TGGGGCTAGAGGATCTACATTTCTACGACCTCTACACACCGATCACGGGTGAACCCAGCTTAAGCTACACTTACGAAGAG
GCGCAACAAGAAGCCTTGAAGGCGTTAGCGGTCTTAGGGCCAGACTATGTGGCTAATGTACAAAAAATGTTCGACAGTCG
GGCTATTGACGTCGTCGAAAATAAGGGGAAGCGGACGGGTGCCTACTCCGGTGGGATGTACGATACTAAGCCGTATATCT
TACTGAATTGGCAGGACAGTCTGGAAAGCTTGTTCACGCTGGTTCACGAAATGGGTCACAGCATGCACAGCCACTATACC
CGGACAAATCAACCTTACCAGTACGGGGACTACTCGATCTTTGTGGCCGAAATTGCGTCGACAACGAACGAAAATCTCTT
AACGGATTACCTGTTAAAGACGCAAACCGACCCGCAAGTTCGCGCCTACGTCCTGAACCATTACCTGGACGGCTTCAAGG
GAACGGTTTATCGTCAAACACAATTCGCTGAATTCGAAGATTACATTCACCAACAAGCCGCAGCCGGTGAAACGTTGACG
GCCGACTTCATGAGCAAGTTCTACGGTGATTTGAACGCCCGTTACTACGGTGACAACTTAGCTAAGGACCCACAGATTGC
TGATGAGTGGACCCGGATTCCGCATTTCTACTACAACTACTACGTTTACCAATACGCGACTGGCTTTGCGGCCGCAACGA
CACTTTCACAACGGATCTTGAGTGGGGATGCTGCCAAGCGGGACGCCTACCTGACCTACCTGAAGTCAGGGAGCTCAGCA
TTGCCATTAGACGTGATGCGTAAGGCCGGCGTTGACATGACCCAACCAGACTACTTGGAAACGGCCTTCGCCACCTTCGA
CAAGCGATTAGCTGAGTTCAACGAGTTAGCTCACCAACTGAAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.771

98.505

0.51

Multiple sequence alignment