Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABN16_RS01910 Genome accession   NZ_CP012033
Coordinates   392128..393504 (-) Length   458 a.a.
NCBI ID   WP_156166881.1    Uniprot ID   -
Organism   Levilactobacillus koreensis strain 26-25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 387128..398504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN16_RS01895 (ABN16_01900) cysS 387194..388606 (-) 1413 WP_048732458.1 cysteine--tRNA ligase -
  ABN16_RS01900 (ABN16_01905) gltX 389240..390730 (-) 1491 WP_048732459.1 glutamate--tRNA ligase -
  ABN16_RS01905 (ABN16_01910) - 390909..392099 (-) 1191 WP_048732460.1 PIN/TRAM domain-containing protein -
  ABN16_RS01910 (ABN16_01915) radA 392128..393504 (-) 1377 WP_156166881.1 DNA repair protein RadA Machinery gene
  ABN16_RS01915 (ABN16_01920) - 393597..394136 (-) 540 WP_048732462.1 hypothetical protein -
  ABN16_RS13845 - 394271..394426 (-) 156 WP_156166882.1 hypothetical protein -
  ABN16_RS01920 (ABN16_01925) - 394839..395180 (+) 342 WP_048732463.1 hypothetical protein -
  ABN16_RS01925 (ABN16_01930) rpiA 395186..395872 (+) 687 WP_048732464.1 ribose-5-phosphate isomerase RpiA -
  ABN16_RS01930 (ABN16_01935) - 396047..397381 (-) 1335 WP_048732465.1 C1 family peptidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49733.13 Da        Isoelectric Point: 7.0364

>NTDB_id=150684 ABN16_RS01910 WP_156166881.1 392128..393504(-) (radA) [Levilactobacillus koreensis strain 26-25]
MAKQKTNFVCQNCDYSSPRYLGRCPNCGEWNTMVEEVVVPESAKPQSTRVTPAGEHSKPQLMSEIKHSTESRVKTQMEEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSQTGGKVLYVSGEESASQIKMRADRLVVNSDHLYLYPETDMASIR
ANIEEMQPDYVVIDSVQTMQAPGIESAIGSVSQIRAVTGELMQIAKTNGITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDMHYSYRILRAVKNRFGSTNELGIFEMRDGGLYEVANPSEMFLEERLKDATGSSIVVSMEGTRPILVEVQALITPSVF
GNAQRTSSGLDRNRVSLLMAVLEKRANLMLQNQDAFLKAAGGVKLDEPAIDLAIAMSIASSYRDTATAATDGFVGEVGLT
GEIRRVNRIEQRVGEAKKLGFKRIFVPKNNLQGWTPPKGIEVIGVSTLRQTLKLALGV

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=150684 ABN16_RS01910 WP_156166881.1 392128..393504(-) (radA) [Levilactobacillus koreensis strain 26-25]
GTGGCTAAGCAGAAAACGAACTTTGTTTGTCAAAATTGTGATTATAGTTCGCCACGTTACTTGGGCCGTTGCCCGAACTG
TGGCGAATGGAATACGATGGTCGAAGAGGTCGTCGTTCCGGAGTCGGCCAAGCCGCAATCAACGCGAGTCACCCCTGCTG
GTGAACACTCTAAGCCACAGCTGATGAGTGAGATCAAGCATTCGACCGAATCGCGCGTGAAGACGCAGATGGAAGAGCTC
AACCGGGTCTTGGGTGGGGGAATCGTTCCTGGCTCACTGATCCTGATTGGTGGGGATCCCGGTATCGGGAAATCCACATT
GCTTCTCCAAGTTTCCGGCCAACTCAGCCAGACTGGGGGTAAGGTCCTGTACGTTTCTGGTGAGGAAAGTGCCTCGCAGA
TCAAGATGCGCGCGGACCGGCTAGTGGTTAACAGTGATCATCTTTACCTCTATCCAGAGACCGACATGGCCAGCATTCGG
GCAAATATCGAAGAGATGCAGCCAGACTATGTGGTGATCGACTCCGTACAAACCATGCAGGCGCCCGGCATTGAATCCGC
CATTGGGTCCGTTTCTCAGATTCGGGCAGTCACCGGCGAACTGATGCAGATTGCGAAGACCAACGGCATCACGATCTTTG
TTGTGGGTCATGTGACCAAGGGGGGCGCCATCGCTGGGCCTAAGATCCTGGAGCACATGGTGGATACGGTCTTGTACTTC
GAGGGTGACATGCACTACAGCTACCGCATCTTGCGGGCAGTGAAGAACCGGTTTGGCTCGACTAATGAACTAGGAATCTT
TGAGATGCGAGACGGCGGCCTTTATGAGGTGGCCAACCCATCTGAAATGTTCCTGGAAGAACGGCTCAAGGACGCCACCG
GGTCATCCATTGTGGTCTCCATGGAAGGGACGCGGCCCATTCTGGTTGAAGTTCAGGCGTTGATTACGCCATCGGTCTTT
GGTAACGCGCAGCGGACTTCAAGTGGGTTGGATCGCAACCGGGTCTCACTGCTGATGGCCGTACTGGAAAAGCGGGCCAA
CCTGATGCTTCAGAATCAGGATGCCTTTTTAAAGGCGGCTGGTGGGGTCAAACTCGACGAACCGGCCATTGATTTGGCCA
TCGCCATGAGTATTGCTTCTAGTTACCGTGACACGGCGACTGCCGCCACGGATGGTTTCGTGGGTGAAGTCGGTTTGACC
GGTGAAATTCGTCGGGTCAACCGAATCGAACAACGGGTCGGCGAAGCCAAGAAGCTCGGATTTAAACGGATTTTTGTTCC
TAAGAATAATCTGCAGGGGTGGACCCCACCGAAGGGCATTGAAGTCATCGGCGTTTCCACGTTACGGCAGACGTTAAAAT
TGGCGCTGGGCGTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

67.991

98.908

0.672
  radA Streptococcus mitis SK321

67.991

98.908

0.672
  radA Streptococcus pneumoniae Rx1

67.991

98.908

0.672
  radA Streptococcus pneumoniae D39

67.991

98.908

0.672
  radA Streptococcus pneumoniae R6

67.991

98.908

0.672
  radA Streptococcus pneumoniae TIGR4

67.991

98.908

0.672
  radA Bacillus subtilis subsp. subtilis str. 168

64.551

99.782

0.644

Multiple sequence alignment