Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilN   Type   Machinery gene
Locus tag   WX61_RS07225 Genome accession   NZ_CP012028
Coordinates   1357497..1358096 (-) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae strain 35/02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1352497..1363096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX61_RS07210 (WX61_01364) pilQ 1354072..1356267 (-) 2196 WP_003690569.1 type IV pilus secretin PilQ Machinery gene
  WX61_RS07215 (WX61_01365) pilP 1356286..1356831 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  WX61_RS07220 (WX61_01366) - 1356849..1357496 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  WX61_RS07225 (WX61_01367) pilN 1357497..1358096 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  WX61_RS07230 (WX61_01368) pilM 1358099..1359214 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  WX61_RS07235 (WX61_01369) - 1359366..1361762 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  WX61_RS07240 (WX61_01370) yihA 1361883..1362512 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence


Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=150651 WX61_RS07225 WP_003687354.1 1357497..1358096(-) (pilN) [Neisseria gonorrhoeae strain 35/02]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=150651 WX61_RS07225 WP_003687354.1 1357497..1358096(-) (pilN) [Neisseria gonorrhoeae strain 35/02]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains


Predicted by InterproScan.

(104-177)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975


Multiple sequence alignment