Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   WX60_RS09900 Genome accession   NZ_CP012027
Coordinates   1834437..1835036 (-) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae strain FA6140     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829437..1840036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX60_RS09880 (WX60_01874) - 1829606..1830118 (-) 513 WP_003687349.1 shikimate kinase -
  WX60_RS09885 (WX60_01875) pilQ 1831012..1833207 (-) 2196 WP_010356660.1 type IV pilus secretin PilQ Machinery gene
  WX60_RS09890 (WX60_01876) pilP 1833226..1833771 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  WX60_RS09895 (WX60_01877) - 1833789..1834436 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  WX60_RS09900 (WX60_01878) pilN 1834437..1835036 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  WX60_RS09905 (WX60_01879) pilM 1835039..1836154 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  WX60_RS09910 (WX60_01880) - 1836306..1838702 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  WX60_RS09915 (WX60_01881) yihA 1838822..1839451 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=150614 WX60_RS09900 WP_003687354.1 1834437..1835036(-) (pilN) [Neisseria gonorrhoeae strain FA6140]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=150614 WX60_RS09900 WP_003687354.1 1834437..1835036(-) (pilN) [Neisseria gonorrhoeae strain FA6140]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975

Multiple sequence alignment