Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   OB07_RS26675 Genome accession   NZ_CP014948
Coordinates   5777661..5778185 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain N17-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5772661..5783185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB07_RS26660 (OB07_05338) aroB 5773777..5774883 (-) 1107 WP_062877754.1 3-dehydroquinate synthase -
  OB07_RS26665 (OB07_05339) aroK 5774933..5775451 (-) 519 WP_003095833.1 shikimate kinase AroK -
  OB07_RS26670 (OB07_05340) pilQ 5775463..5777607 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  OB07_RS26675 (OB07_05341) comL/pilP 5777661..5778185 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  OB07_RS26680 (OB07_05342) pilO 5778182..5778805 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  OB07_RS26685 (OB07_05343) pilN 5778802..5779398 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  OB07_RS26690 (OB07_05344) pilM 5779398..5780462 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OB07_RS26695 (OB07_05345) - 5780647..5783118 (+) 2472 WP_062877756.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=150593 OB07_RS26675 WP_003095836.1 5777661..5778185(-) (comL/pilP) [Pseudomonas aeruginosa strain N17-1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=150593 OB07_RS26675 WP_003095836.1 5777661..5778185(-) (comL/pilP) [Pseudomonas aeruginosa strain N17-1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGATGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment