Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | VT05_RS10940 | Genome accession | NZ_CP012026 |
| Coordinates | 2023063..2026191 (-) | Length | 1042 a.a. |
| NCBI ID | WP_020996762.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain FA19 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2008792..2028181 | 2023063..2026191 | within | 0 |
Gene organization within MGE regions
Location: 2008792..2028181
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VT05_RS10875 (VT05_02068) | orn | 2009171..2009734 (-) | 564 | WP_003687260.1 | oligoribonuclease | - |
| VT05_RS10880 (VT05_02069) | prmA | 2009752..2010639 (-) | 888 | WP_003692488.1 | 50S ribosomal protein L11 methyltransferase | - |
| VT05_RS10885 (VT05_02070) | accC | 2010743..2012104 (-) | 1362 | WP_003692490.1 | acetyl-CoA carboxylase biotin carboxylase subunit | - |
| VT05_RS10890 (VT05_02071) | accB | 2012218..2012679 (-) | 462 | WP_003687267.1 | acetyl-CoA carboxylase biotin carboxyl carrier protein | - |
| VT05_RS10895 | - | 2012661..2012918 (-) | 258 | WP_003687268.1 | hypothetical protein | - |
| VT05_RS10900 (VT05_02072) | queA | 2013035..2014075 (+) | 1041 | WP_003687270.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| VT05_RS10905 (VT05_02073) | carB | 2014276..2017491 (-) | 3216 | WP_003692496.1 | carbamoyl-phosphate synthase large subunit | - |
| VT05_RS10910 (VT05_02074) | - | 2017502..2018035 (-) | 534 | WP_003692498.1 | hypothetical protein | - |
| VT05_RS10915 (VT05_02075) | - | 2019317..2019706 (-) | 390 | WP_003687278.1 | endonuclease domain-containing protein | - |
| VT05_RS10925 (VT05_02076) | - | 2019869..2020248 (-) | 380 | Protein_2055 | VOC family protein | - |
| VT05_RS10930 (VT05_02077) | carA | 2020302..2021435 (-) | 1134 | WP_003692502.1 | glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | - |
| VT05_RS10940 (VT05_02078) | pilC | 2023063..2026191 (-) | 3129 | WP_020996762.1 | PilC family type IV pilus tip adhesin | Machinery gene |
Sequence
Protein
Download Length: 1042 a.a. Molecular weight: 114338.99 Da Isoelectric Point: 9.7927
>NTDB_id=150568 VT05_RS10940 WP_020996762.1 2023063..2026191(-) (pilC) [Neisseria gonorrhoeae strain FA19]
MNKTLKRRVFRHTALYAAILMFSHTGGGGAMAQTRNYAIVMNERNQPEVKWEGQYNQSALKDKSRERTFSHTSQKNDLGI
TSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTDRLKERANAAGWIRTTRPGLAGYAYTGVTCRSSNQCPQLV
YKTRFSFDNTGLAKNAGRLDRHPDPSRENSPIYKLKDHPWLGVSFNLGSEGTDKDGRSSNKLVSSFDENNSNSNQNLVYT
TEGHRISLGDWQREHTAMAYYLNAKLHLLNKKEIKDIAQNKTVDLGTLRPRVETTGRGWLSFWATWKIEDKGNITVRLGL
PEVKAGRCTNTAHPNSKAKPLSPALTAPALWFGPGQNGKVQMYSASVSTYPGSSSSRIFLQELKTRTDSARPGRHSLAAL
DTQNIKSREPGFNGRQTVIRLPGGVYKINPGKNGGRVAGINGNDGKNDTFGIFKDRYVTPETDEWSEMLLPWTARYYGND
TPFQTSNKPNNQKKYSQKYRIRTKEDDNDKPRDLGDIVNSPIVAVDGYLATSANDGMVHLFKRNGTDQRGYELKLSYIPG
TMERKDIENQDSTLAKELRTFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGFGGRGAYALDLSKIDSSNLTG
VSMFDVQNDKNNNKNDSNRVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKDIGSGDNTTALYVYDLENGSGSLIKKIEAP
GGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSNSDLNKWSAKAIFEGTKPITSAPAVSRLADKRVVIFGTGSDL
SEEDVVGTNQQYIYGIFDDDKGTVKVTVQNGTGGGLLEQTLTKENNTLFLSNNKASGGSNGEGWVVKLGEGERVTVKPTV
VLRTAFVTIRKYTGMDKCGAQTAILGINTADGGALTPRSARPIVPSDQVAQYSGHKTTSKGKSVPIGCMEKDSKTVCPNG
YIYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREV
FF
MNKTLKRRVFRHTALYAAILMFSHTGGGGAMAQTRNYAIVMNERNQPEVKWEGQYNQSALKDKSRERTFSHTSQKNDLGI
TSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTDRLKERANAAGWIRTTRPGLAGYAYTGVTCRSSNQCPQLV
YKTRFSFDNTGLAKNAGRLDRHPDPSRENSPIYKLKDHPWLGVSFNLGSEGTDKDGRSSNKLVSSFDENNSNSNQNLVYT
TEGHRISLGDWQREHTAMAYYLNAKLHLLNKKEIKDIAQNKTVDLGTLRPRVETTGRGWLSFWATWKIEDKGNITVRLGL
PEVKAGRCTNTAHPNSKAKPLSPALTAPALWFGPGQNGKVQMYSASVSTYPGSSSSRIFLQELKTRTDSARPGRHSLAAL
DTQNIKSREPGFNGRQTVIRLPGGVYKINPGKNGGRVAGINGNDGKNDTFGIFKDRYVTPETDEWSEMLLPWTARYYGND
TPFQTSNKPNNQKKYSQKYRIRTKEDDNDKPRDLGDIVNSPIVAVDGYLATSANDGMVHLFKRNGTDQRGYELKLSYIPG
TMERKDIENQDSTLAKELRTFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGFGGRGAYALDLSKIDSSNLTG
VSMFDVQNDKNNNKNDSNRVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKDIGSGDNTTALYVYDLENGSGSLIKKIEAP
GGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSNSDLNKWSAKAIFEGTKPITSAPAVSRLADKRVVIFGTGSDL
SEEDVVGTNQQYIYGIFDDDKGTVKVTVQNGTGGGLLEQTLTKENNTLFLSNNKASGGSNGEGWVVKLGEGERVTVKPTV
VLRTAFVTIRKYTGMDKCGAQTAILGINTADGGALTPRSARPIVPSDQVAQYSGHKTTSKGKSVPIGCMEKDSKTVCPNG
YIYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREV
FF
Nucleotide
Download Length: 3129 bp
>NTDB_id=150568 VT05_RS10940 WP_020996762.1 2023063..2026191(-) (pilC) [Neisseria gonorrhoeae strain FA19]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACCCGTAACTACGCTATTGTCATGAACGAACGAAATCAGCCGGAGGTAAAGTGGGAGGGTC
AATATAATCAATCAGCATTAAAGGACAAAAGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACGACCTCGGCATC
ACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCAC
CTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATACCGATAGGCTGAAAGAGCGCGCCAATGCCGCCGGTTGGATTC
GTACCACCCGGCCCGGGCTGGCAGGCTACGCCTACACCGGCGTCACATGCAGAAGCAGCAACCAATGCCCCCAACTTGTC
TATAAAACCCGATTTTCCTTCGACAACACCGGTTTGGCAAAAAATGCGGGCAGGCTGGATAGGCACCCGGACCCAAGCCG
CGAAAATTCGCCCATTTACAAATTGAAAGATCATCCATGGTTGGGCGTATCTTTCAATTTGGGCAGCGAGGGTACCGACA
AAGATGGCAGATCATCCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACG
ACAGAAGGCCACCGTATTTCCCTTGGCGACTGGCAGCGCGAACATACCGCCATGGCCTATTATCTGAACGCCAAACTGCA
CCTGCTGAACAAAAAAGAGATTAAAGATATCGCCCAAAACAAAACAGTGGATTTGGGCACCTTGAGACCGCGCGTCGAGA
CGACAGGACGAGGCTGGCTAAGTTTTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTACAGTCCGCCTCGGTCTG
CCGGAAGTCAAAGCAGGCCGCTGCACCAACACCGCCCACCCCAATTCCAAAGCCAAACCCCTTTCGCCGGCCCTGACCGC
CCCCGCGCTGTGGTTCGGCCCTGGGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGGCAGCT
CGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCGAACCGACTCCGCCCGGCCCGGCCGGCATTCCCTCGCCGCTTTG
GATACGCAGAACATCAAAAGCCGCGAGCCGGGTTTCAACGGAAGGCAGACCGTCATCCGATTGCCGGGCGGCGTGTACAA
GATCAACCCGGGCAAGAACGGCGGCCGGGTCGCGGGTATTAATGGCAATGACGGCAAAAACGACACTTTCGGCATCTTCA
AGGACAGGTATGTCACACCTGAGACCGACGAGTGGAGCGAAATGCTGCTGCCTTGGACGGCTCGGTATTACGGTAATGAC
ACTCCATTTCAAACATCCAACAAACCAAACAACCAAAAAAAATACAGCCAAAAATACCGCATCCGCACAAAAGAAGATGA
CAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGACGGGTATTTGGCAACTTCTGCCA
ACGACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAGACCAACGAGGCTACGAACTGAAGCTCAGCTACATCCCGGGT
ACGATGGAGCGTAAGGATATTGAAAACCAAGACTCCACCCTCGCCAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGT
GGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAAGACAGGCAAAAACATTTCTTTA
TGTTTGGTGCGATGGGTTTTGGCGGCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATCGACAGCAGCAACCTGACCGGC
GTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAAGAATGACAGTAATCGCGTGAAATTAGGCTACACCGTCGG
TACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCTTCCGGTTATGCGGCTAAAGATATTGGCA
GCGGCGATAATACAACCGCGCTGTATGTGTATGATTTGGAAAACGGCAGTGGTAGTCTGATTAAAAAAATCGAAGCACCC
GGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGA
CCGGGGCGGCAATATGTACCGCTTTGATTTGAGCAATTCCGATCTTAATAAATGGTCTGCAAAGGCTATTTTCGAAGGCA
CAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTTATCTTCGGTACGGGCAGCGATTTG
AGTGAAGAGGATGTAGTCGGTACGAATCAACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGTTAAGGTAAC
GGTACAAAACGGCACGGGAGGCGGGTTGCTCGAGCAAACGCTTACGAAGGAAAATAACACCTTGTTCCTGAGCAATAATA
AGGCATCCGGCGGATCGAACGGCGAAGGGTGGGTAGTGAAATTGGGGGAAGGAGAACGCGTTACCGTCAAACCGACCGTG
GTATTGCGTACCGCCTTCGTGACCATCCGGAAATATACGGGCATGGACAAATGTGGCGCGCAAACCGCCATTTTGGGCAT
CAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGAGTGACCAGGTTGCGCAATATTCCG
GCCATAAGACAACCTCCAAAGGCAAGTCCGTCCCTATAGGTTGTATGGAAAAAGACAGCAAAACCGTCTGCCCGAACGGA
TATATTTACGACAAACCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGA
TGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCA
CCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTC
TTCTTCTGA
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACCCGTAACTACGCTATTGTCATGAACGAACGAAATCAGCCGGAGGTAAAGTGGGAGGGTC
AATATAATCAATCAGCATTAAAGGACAAAAGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACGACCTCGGCATC
ACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCAC
CTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATACCGATAGGCTGAAAGAGCGCGCCAATGCCGCCGGTTGGATTC
GTACCACCCGGCCCGGGCTGGCAGGCTACGCCTACACCGGCGTCACATGCAGAAGCAGCAACCAATGCCCCCAACTTGTC
TATAAAACCCGATTTTCCTTCGACAACACCGGTTTGGCAAAAAATGCGGGCAGGCTGGATAGGCACCCGGACCCAAGCCG
CGAAAATTCGCCCATTTACAAATTGAAAGATCATCCATGGTTGGGCGTATCTTTCAATTTGGGCAGCGAGGGTACCGACA
AAGATGGCAGATCATCCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACG
ACAGAAGGCCACCGTATTTCCCTTGGCGACTGGCAGCGCGAACATACCGCCATGGCCTATTATCTGAACGCCAAACTGCA
CCTGCTGAACAAAAAAGAGATTAAAGATATCGCCCAAAACAAAACAGTGGATTTGGGCACCTTGAGACCGCGCGTCGAGA
CGACAGGACGAGGCTGGCTAAGTTTTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTACAGTCCGCCTCGGTCTG
CCGGAAGTCAAAGCAGGCCGCTGCACCAACACCGCCCACCCCAATTCCAAAGCCAAACCCCTTTCGCCGGCCCTGACCGC
CCCCGCGCTGTGGTTCGGCCCTGGGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGGCAGCT
CGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCGAACCGACTCCGCCCGGCCCGGCCGGCATTCCCTCGCCGCTTTG
GATACGCAGAACATCAAAAGCCGCGAGCCGGGTTTCAACGGAAGGCAGACCGTCATCCGATTGCCGGGCGGCGTGTACAA
GATCAACCCGGGCAAGAACGGCGGCCGGGTCGCGGGTATTAATGGCAATGACGGCAAAAACGACACTTTCGGCATCTTCA
AGGACAGGTATGTCACACCTGAGACCGACGAGTGGAGCGAAATGCTGCTGCCTTGGACGGCTCGGTATTACGGTAATGAC
ACTCCATTTCAAACATCCAACAAACCAAACAACCAAAAAAAATACAGCCAAAAATACCGCATCCGCACAAAAGAAGATGA
CAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGACGGGTATTTGGCAACTTCTGCCA
ACGACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAGACCAACGAGGCTACGAACTGAAGCTCAGCTACATCCCGGGT
ACGATGGAGCGTAAGGATATTGAAAACCAAGACTCCACCCTCGCCAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGT
GGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAAGACAGGCAAAAACATTTCTTTA
TGTTTGGTGCGATGGGTTTTGGCGGCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATCGACAGCAGCAACCTGACCGGC
GTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAAGAATGACAGTAATCGCGTGAAATTAGGCTACACCGTCGG
TACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCTTCCGGTTATGCGGCTAAAGATATTGGCA
GCGGCGATAATACAACCGCGCTGTATGTGTATGATTTGGAAAACGGCAGTGGTAGTCTGATTAAAAAAATCGAAGCACCC
GGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGA
CCGGGGCGGCAATATGTACCGCTTTGATTTGAGCAATTCCGATCTTAATAAATGGTCTGCAAAGGCTATTTTCGAAGGCA
CAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTTATCTTCGGTACGGGCAGCGATTTG
AGTGAAGAGGATGTAGTCGGTACGAATCAACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGTTAAGGTAAC
GGTACAAAACGGCACGGGAGGCGGGTTGCTCGAGCAAACGCTTACGAAGGAAAATAACACCTTGTTCCTGAGCAATAATA
AGGCATCCGGCGGATCGAACGGCGAAGGGTGGGTAGTGAAATTGGGGGAAGGAGAACGCGTTACCGTCAAACCGACCGTG
GTATTGCGTACCGCCTTCGTGACCATCCGGAAATATACGGGCATGGACAAATGTGGCGCGCAAACCGCCATTTTGGGCAT
CAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGAGTGACCAGGTTGCGCAATATTCCG
GCCATAAGACAACCTCCAAAGGCAAGTCCGTCCCTATAGGTTGTATGGAAAAAGACAGCAAAACCGTCTGCCCGAACGGA
TATATTTACGACAAACCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGA
TGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCA
CCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTC
TTCTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Neisseria meningitidis A1493 |
72.175 |
100 |
0.729 |