Detailed information NTG0150514

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: BSM4216_RS10980
• Genome accession: NZ_CP012024
• Coordinates: 2330298..2332700 (-)
• Length: 800 a.a.
• NCBI ID: WP_156179250.1
• Uniprot ID: -
• Organism: Bacillus smithii strain DSM 4216
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2327956..2329317	2330298..2332700	flank	981

Gene organization within MGE regions

Location: 2327956..2332700

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSM4216_RS10970 (BSM4216_2679)	-	2327956..2329317 (-)	1362	WP_048622333.1	IS1182 family transposase	-
BSM4216_RS16400 (BSM4216_2680)	-	2329437..2329568 (-)	132	WP_003355462.1	YrzQ family protein	-
BSM4216_RS16405 (BSM4216_2681)	-	2329584..2329772 (-)	189	WP_003355463.1	hypothetical protein	-
BSM4216_RS10975 (BSM4216_2682)	-	2329744..2330256 (-)	513	WP_003355464.1	PRC-barrel domain-containing protein	-
BSM4216_RS10980 (BSM4216_2683)	recD2	2330298..2332700 (-)	2403	WP_156179250.1	ATP-dependent RecD-like DNA helicase	Machinery gene

Sequence

Protein

• Length: 800 a.a.
• Molecular weight: 90610.28 Da
• Isoelectric Point: 5.0067

>NTDB_id=150514 BSM4216_RS10980 WP_156179250.1 2330298..2332700(-) (recD2) [Bacillus smithii strain DSM 4216]
MEGQHNIGLFAEQETYVKGRHIATIFRNEQNLYTVIRVKVEETNDQYEEKEAVITGYFPQVHEHETYTFYGFFQEHPKFG
IQFQCKHFQKEVPQTRQGVINYLSSELFKGIGRKTAERIVDHLGEDAISKILKSPSVLDGVPNLSSEKAKALYDVLKENE
GLEQIMVALNQYGFGPQMSMKIYQTYKEQTLDIIQKNPYQLVEDVEGIGFSRADELGKQLGMDETHPERLKAACLYTLES
ECLQEGHVYLDQKDLLSKGKALLDKNSSTPIAETDISEQLHQLKKEKKLIEEEDRIYIPSLYFAEKGIVSNIQRILAQDQ
YEEQFPESEFLLALGKLEERIGVQYASSQKKAIQTALLSPMLLLTGGPGTGKTTVIKGIVELYAELHGLSLDPKDYSKDD
PFPIVLGAPTGRAAKRMAESTGLPAATIHRLLGWNGQAGIDFEQDRTINGKLVIIDEMSMVDTWLAYQFFNALPEEVQVV
LVGDEDQLPSVGPGQVLKDLLDSKTIPTVQLTDIYRQENGSSIIELAHEIKKGKLPADLAVQKKDRSFIKCSTQQIASVV
EQVVENARNKGFTAKDIQVLAPMYKGPAGIDRLNKMLQEILNPNHDQSRKELAFGDTVYRIGDKVLQLVNKPEKNVFNGD
IGEVISIFYAKENTEKQDMVLVSFEGNEVTYTRQELNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRKNLLYTAVT
RSKKFLILCGEEEAFRWGVERNDSLLRKTTLCQKLSEVLANKDADSKEENSISYPMSEEEWMQINPMIGMENVTPYDFME

Nucleotide

• Length: 2403 bp

>NTDB_id=150514 BSM4216_RS10980 WP_156179250.1 2330298..2332700(-) (recD2) [Bacillus smithii strain DSM 4216]
ATGGAAGGGCAGCACAATATCGGCCTGTTTGCAGAACAGGAAACATATGTGAAAGGCCGCCATATCGCGACCATCTTTCG
CAATGAACAAAATCTTTATACCGTCATAAGGGTAAAAGTGGAAGAAACAAATGACCAATATGAAGAAAAAGAAGCGGTCA
TTACTGGTTATTTTCCGCAAGTACACGAACATGAAACATACACCTTTTATGGCTTTTTTCAAGAGCATCCAAAATTCGGA
ATTCAATTTCAATGCAAACATTTTCAAAAAGAAGTTCCTCAGACAAGGCAAGGAGTGATCAATTATTTATCGAGCGAATT
GTTCAAGGGAATCGGGCGAAAAACGGCGGAAAGAATTGTCGATCATTTAGGCGAAGATGCCATTTCCAAAATATTGAAAT
CCCCTTCCGTGCTTGATGGTGTTCCGAATCTATCCTCAGAAAAAGCGAAAGCTCTTTACGATGTTTTAAAGGAAAATGAA
GGGCTCGAACAAATCATGGTCGCCTTAAATCAATACGGATTCGGTCCGCAAATGTCCATGAAAATTTACCAGACCTATAA
AGAACAAACGTTGGATATTATCCAAAAAAATCCTTATCAGCTTGTGGAGGACGTGGAAGGGATCGGATTTTCGCGCGCTG
ATGAATTAGGAAAACAGCTTGGAATGGATGAGACACACCCAGAACGTTTGAAAGCAGCCTGTTTGTATACGCTGGAATCG
GAATGTCTGCAAGAAGGTCATGTCTATTTGGATCAAAAGGACTTGCTTTCAAAAGGAAAAGCTCTCTTGGATAAAAACAG
CAGCACTCCAATCGCTGAGACTGACATATCCGAACAGCTTCATCAATTGAAAAAAGAGAAGAAGCTGATTGAAGAAGAGG
ACAGAATTTATATTCCGTCTCTCTATTTCGCTGAAAAAGGGATTGTTTCCAATATTCAGCGCATCTTAGCCCAAGATCAA
TACGAGGAACAATTTCCTGAATCAGAATTTTTATTAGCCTTGGGAAAATTAGAAGAAAGAATTGGCGTACAGTATGCTTC
CTCTCAGAAAAAAGCGATCCAAACGGCTTTATTATCGCCGATGCTGCTGCTGACGGGCGGCCCCGGAACGGGAAAAACCA
CAGTAATCAAAGGAATTGTCGAATTATACGCAGAGCTGCACGGTCTATCTTTGGATCCGAAAGATTATAGTAAAGACGAC
CCTTTTCCAATCGTCTTAGGAGCGCCTACGGGAAGAGCTGCAAAAAGGATGGCGGAATCAACGGGCCTGCCGGCAGCAAC
GATCCACCGATTGCTTGGCTGGAACGGACAAGCCGGAATCGATTTTGAACAAGACCGGACCATTAACGGAAAATTAGTGA
TCATTGATGAAATGTCCATGGTGGATACATGGCTGGCTTATCAATTTTTTAATGCGCTGCCGGAGGAAGTTCAAGTCGTG
CTGGTAGGGGACGAAGATCAGCTGCCATCTGTCGGCCCGGGACAAGTGTTAAAAGACTTGCTGGACTCGAAAACGATACC
GACTGTACAGCTTACGGATATTTATCGGCAAGAAAACGGATCTTCCATCATTGAATTAGCTCATGAAATCAAAAAGGGAA
AACTGCCTGCTGACCTAGCTGTTCAAAAAAAAGATCGCTCGTTTATTAAATGTTCCACACAACAAATTGCCAGCGTTGTT
GAGCAAGTGGTGGAAAATGCTCGCAACAAAGGATTTACGGCAAAAGATATTCAAGTTTTGGCTCCAATGTATAAAGGGCC
TGCCGGGATTGACCGTTTAAATAAAATGCTGCAGGAAATTTTAAATCCAAATCATGATCAATCTCGAAAAGAATTGGCTT
TCGGGGATACAGTCTACCGTATTGGAGATAAAGTGCTTCAGCTTGTCAACAAACCGGAAAAAAATGTATTTAACGGCGAT
ATCGGTGAGGTCATTTCCATTTTTTACGCGAAAGAAAACACGGAAAAACAAGACATGGTCCTTGTTTCTTTTGAAGGAAA
TGAAGTCACCTATACACGCCAAGAATTGAATCAGATCACTCATGCTTATTGCTGTTCCATCCACAAATCACAAGGAAGCG
AATTTCCTATCGTGATTTTGCCTGTTGTGAAAAGCTATTATCGCATGCTGCGAAAAAATTTATTATATACTGCCGTGACC
AGAAGCAAAAAATTTTTAATTTTATGCGGCGAAGAAGAAGCGTTTCGTTGGGGCGTTGAACGTAACGATAGTTTGTTGAG
AAAAACAACTCTTTGCCAAAAACTGTCAGAAGTGTTGGCTAATAAAGATGCTGACAGCAAGGAAGAAAATTCCATTTCCT
ATCCGATGAGTGAAGAAGAGTGGATGCAAATCAATCCTATGATAGGAATGGAAAACGTTACCCCTTATGATTTTATGGAG
TAA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-664)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-249)

• AAA domain (AAA_30) (345-553)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	61.702	99.875	0.616