Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   OB07_RS00100 Genome accession   NZ_CP014948
Coordinates   21697..22722 (+) Length   341 a.a.
NCBI ID   WP_062877380.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain N17-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16697..27722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB07_RS00075 (OB07_00015) - 16885..17202 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  OB07_RS00080 (OB07_00016) trkA 17351..18724 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  OB07_RS00085 (OB07_00017) rsmB 18752..20056 (-) 1305 WP_003122291.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OB07_RS00090 (OB07_00018) fmt 20053..20997 (-) 945 WP_010793609.1 methionyl-tRNA formyltransferase -
  OB07_RS00095 (OB07_00019) def 21052..21558 (-) 507 WP_003107059.1 peptide deformylase -
  OB07_RS00100 (OB07_00020) tsaP 21697..22722 (+) 1026 WP_062877380.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OB07_RS00105 (OB07_00021) dprA 22857..23945 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  OB07_RS00110 (OB07_00022) - 23986..24543 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  OB07_RS00115 (OB07_00023) - 24553..25530 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  OB07_RS00120 (OB07_00024) hemF 25721..26638 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  OB07_RS00125 (OB07_00025) aroE 26696..27520 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37551.99 Da        Isoelectric Point: 9.3358

>NTDB_id=150512 OB07_RS00100 WP_062877380.1 21697..22722(+) (tsaP) [Pseudomonas aeruginosa strain N17-1]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKLADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=150512 OB07_RS00100 WP_062877380.1 21697..22722(+) (tsaP) [Pseudomonas aeruginosa strain N17-1]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGGCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGCTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.785

100

0.396

Multiple sequence alignment