Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | BSM4216_RS10450 | Genome accession | NZ_CP012024 |
| Coordinates | 2226322..2227401 (-) | Length | 359 a.a. |
| NCBI ID | WP_048623682.1 | Uniprot ID | - |
| Organism | Bacillus smithii strain DSM 4216 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2221322..2232401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSM4216_RS10410 (BSM4216_2540) | - | 2221799..2222584 (+) | 786 | WP_003355322.1 | YqhG family protein | - |
| BSM4216_RS10415 (BSM4216_2542) | - | 2222880..2223380 (-) | 501 | WP_048623676.1 | shikimate kinase | - |
| BSM4216_RS10420 (BSM4216_2543) | - | 2223395..2223763 (-) | 369 | WP_048623677.1 | hypothetical protein | - |
| BSM4216_RS10425 (BSM4216_2544) | comGF | 2223756..2224184 (-) | 429 | WP_048623678.1 | competence type IV pilus minor pilin ComGF | - |
| BSM4216_RS16760 (BSM4216_2545) | - | 2224195..2224509 (-) | 315 | WP_048623679.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| BSM4216_RS10435 (BSM4216_2546) | comGD | 2224549..2224986 (-) | 438 | WP_048623680.1 | competence type IV pilus minor pilin ComGD | - |
| BSM4216_RS10440 (BSM4216_2547) | comGC | 2224989..2225303 (-) | 315 | WP_003355330.1 | competence type IV pilus major pilin ComGC | - |
| BSM4216_RS10445 (BSM4216_2548) | comGB | 2225322..2226389 (-) | 1068 | WP_048623681.1 | competence type IV pilus assembly protein ComGB | - |
| BSM4216_RS10450 (BSM4216_2549) | comGA | 2226322..2227401 (-) | 1080 | WP_048623682.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BSM4216_RS10455 (BSM4216_2550) | - | 2227509..2229083 (-) | 1575 | WP_174521015.1 | bifunctional UDP-sugar hydrolase/5'-nucleotidase | - |
| BSM4216_RS10460 (BSM4216_2551) | - | 2229920..2230162 (+) | 243 | WP_003355335.1 | DUF2626 domain-containing protein | - |
| BSM4216_RS10465 (BSM4216_2553) | - | 2230642..2231277 (-) | 636 | WP_003355341.1 | MBL fold metallo-hydrolase | - |
| BSM4216_RS16375 (BSM4216_2554) | - | 2231464..2231634 (+) | 171 | WP_048623684.1 | DUF2759 domain-containing protein | - |
Sequence
Protein
Download Length: 359 a.a. Molecular weight: 40700.24 Da Isoelectric Point: 9.6956
>NTDB_id=150511 BSM4216_RS10450 WP_048623682.1 2226322..2227401(-) (comGA) [Bacillus smithii strain DSM 4216]
MSYERNVEQLVEDALSLFATDIHFEPKTHGYQVQLRTHGLLTPFLKLTVKEGERLISQFKYMASMDISEKRKPQSGSLLL
ETKKGKIALRVSTLPSVLQRESLAIRLSPQKSFMDVYRLSLFPNSVKKLLALLRYSHGLMIFTGPTGSGKTTTLYSLVSH
RTRHFNQKVITLEDPVERQNDGWLQLQVNEKAGLTYSAGLKAILRHDPDIVIVGEIRDEETARITMRAALTGHLVLTTMH
TKDAKGAIYRLLEFGIEWHDIQQTLVAVSAQRLVRLLCPFCGESCSPYCPSQFRQKRATIYEIISGAVLQEVLKEAVGKE
GRYTYPTLKQLIRKGIGLGFLGNDELDRWVLEEETPKKI
MSYERNVEQLVEDALSLFATDIHFEPKTHGYQVQLRTHGLLTPFLKLTVKEGERLISQFKYMASMDISEKRKPQSGSLLL
ETKKGKIALRVSTLPSVLQRESLAIRLSPQKSFMDVYRLSLFPNSVKKLLALLRYSHGLMIFTGPTGSGKTTTLYSLVSH
RTRHFNQKVITLEDPVERQNDGWLQLQVNEKAGLTYSAGLKAILRHDPDIVIVGEIRDEETARITMRAALTGHLVLTTMH
TKDAKGAIYRLLEFGIEWHDIQQTLVAVSAQRLVRLLCPFCGESCSPYCPSQFRQKRATIYEIISGAVLQEVLKEAVGKE
GRYTYPTLKQLIRKGIGLGFLGNDELDRWVLEEETPKKI
Nucleotide
Download Length: 1080 bp
>NTDB_id=150511 BSM4216_RS10450 WP_048623682.1 2226322..2227401(-) (comGA) [Bacillus smithii strain DSM 4216]
TTGTCCTATGAAAGAAATGTGGAACAACTAGTGGAAGACGCGCTTTCCTTGTTTGCAACAGATATTCATTTTGAGCCCAA
AACACATGGATATCAAGTTCAATTACGCACTCACGGATTGTTGACGCCTTTTCTGAAGCTGACAGTCAAGGAAGGAGAAC
GGCTGATTTCCCAATTCAAATATATGGCCTCGATGGATATCAGCGAAAAAAGAAAGCCTCAGAGCGGGTCCCTTCTATTA
GAAACGAAGAAAGGAAAAATCGCTCTCCGCGTTTCCACTCTTCCGAGCGTGCTTCAGAGAGAAAGTTTGGCCATTCGGCT
TTCACCGCAAAAATCCTTCATGGATGTTTATCGTCTGTCTCTCTTTCCAAACTCCGTAAAAAAGCTTTTAGCTCTTCTCC
GTTATTCCCACGGTCTAATGATTTTCACCGGTCCAACCGGCAGCGGCAAAACCACTACACTCTATTCTCTTGTTTCCCAT
AGAACTCGTCATTTTAACCAGAAAGTAATTACGTTGGAGGACCCTGTGGAGCGCCAGAATGACGGCTGGCTCCAACTTCA
AGTGAACGAGAAAGCGGGTCTGACATATTCAGCGGGGCTTAAGGCTATTCTCCGCCATGATCCCGATATTGTCATTGTCG
GAGAAATACGTGATGAAGAAACCGCCCGCATCACTATGAGAGCGGCGTTAACCGGTCATTTAGTTTTGACCACGATGCAT
ACAAAGGATGCCAAAGGAGCTATTTATCGGTTGCTTGAATTTGGCATTGAATGGCATGATATTCAACAGACGCTTGTGGC
GGTTTCGGCTCAAAGGCTTGTACGGCTTTTATGCCCTTTTTGCGGGGAATCTTGTTCTCCCTATTGTCCTAGTCAGTTTC
GTCAAAAGCGCGCTACCATTTATGAGATCATCAGCGGTGCAGTACTGCAAGAAGTTTTAAAGGAAGCCGTTGGAAAGGAA
GGACGATACACTTATCCAACGCTGAAACAACTTATACGAAAGGGGATCGGTCTTGGATTTCTTGGGAATGATGAATTGGA
TCGCTGGGTTTTGGAAGAGGAAACACCGAAAAAGATATGA
TTGTCCTATGAAAGAAATGTGGAACAACTAGTGGAAGACGCGCTTTCCTTGTTTGCAACAGATATTCATTTTGAGCCCAA
AACACATGGATATCAAGTTCAATTACGCACTCACGGATTGTTGACGCCTTTTCTGAAGCTGACAGTCAAGGAAGGAGAAC
GGCTGATTTCCCAATTCAAATATATGGCCTCGATGGATATCAGCGAAAAAAGAAAGCCTCAGAGCGGGTCCCTTCTATTA
GAAACGAAGAAAGGAAAAATCGCTCTCCGCGTTTCCACTCTTCCGAGCGTGCTTCAGAGAGAAAGTTTGGCCATTCGGCT
TTCACCGCAAAAATCCTTCATGGATGTTTATCGTCTGTCTCTCTTTCCAAACTCCGTAAAAAAGCTTTTAGCTCTTCTCC
GTTATTCCCACGGTCTAATGATTTTCACCGGTCCAACCGGCAGCGGCAAAACCACTACACTCTATTCTCTTGTTTCCCAT
AGAACTCGTCATTTTAACCAGAAAGTAATTACGTTGGAGGACCCTGTGGAGCGCCAGAATGACGGCTGGCTCCAACTTCA
AGTGAACGAGAAAGCGGGTCTGACATATTCAGCGGGGCTTAAGGCTATTCTCCGCCATGATCCCGATATTGTCATTGTCG
GAGAAATACGTGATGAAGAAACCGCCCGCATCACTATGAGAGCGGCGTTAACCGGTCATTTAGTTTTGACCACGATGCAT
ACAAAGGATGCCAAAGGAGCTATTTATCGGTTGCTTGAATTTGGCATTGAATGGCATGATATTCAACAGACGCTTGTGGC
GGTTTCGGCTCAAAGGCTTGTACGGCTTTTATGCCCTTTTTGCGGGGAATCTTGTTCTCCCTATTGTCCTAGTCAGTTTC
GTCAAAAGCGCGCTACCATTTATGAGATCATCAGCGGTGCAGTACTGCAAGAAGTTTTAAAGGAAGCCGTTGGAAAGGAA
GGACGATACACTTATCCAACGCTGAAACAACTTATACGAAAGGGGATCGGTCTTGGATTTCTTGGGAATGATGAATTGGA
TCGCTGGGTTTTGGAAGAGGAAACACCGAAAAAGATATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
53.955 |
98.607 |
0.532 |
| pilB | Glaesserella parasuis strain SC1401 |
38.439 |
96.379 |
0.37 |