Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BSM4216_RS09415 Genome accession   NZ_CP012024
Coordinates   2014989..2015603 (+) Length   204 a.a.
NCBI ID   WP_048623542.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2009989..2020603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS09380 (BSM4216_2294) - 2011061..2011516 (+) 456 WP_082142301.1 Hsp20/alpha crystallin family protein -
  BSM4216_RS15915 (BSM4216_2295) - 2011592..2012068 (-) 477 WP_053083248.1 YppG family protein -
  BSM4216_RS09390 (BSM4216_2296) yppF 2012242..2012460 (+) 219 WP_048623539.1 YppF family protein -
  BSM4216_RS09395 (BSM4216_2297) - 2012614..2013015 (-) 402 WP_082142380.1 YppE family protein -
  BSM4216_RS09400 (BSM4216_2298) - 2013299..2013529 (-) 231 WP_048623540.1 hypothetical protein -
  BSM4216_RS09410 (BSM4216_2301) - 2013885..2014874 (-) 990 WP_244878002.1 DUF2515 family protein -
  BSM4216_RS09415 (BSM4216_2302) recU 2014989..2015603 (+) 615 WP_048623542.1 Holliday junction resolvase RecU Machinery gene
  BSM4216_RS09420 (BSM4216_2303) - 2015681..2018425 (+) 2745 WP_048623543.1 PBP1A family penicillin-binding protein -
  BSM4216_RS09425 (BSM4216_2304) - 2018576..2019112 (-) 537 WP_048623544.1 YpoC family protein -
  BSM4216_RS09430 (BSM4216_2305) nth 2019078..2019764 (-) 687 WP_048623545.1 endonuclease III -
  BSM4216_RS09435 (BSM4216_2306) - 2019910..2020599 (-) 690 WP_048623546.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 24233.70 Da        Isoelectric Point: 9.7318

>NTDB_id=150508 BSM4216_RS09415 WP_048623542.1 2014989..2015603(+) (recU) [Bacillus smithii strain DSM 4216]
MEFHYPNGKKYNPSQQQIAKKGHSKPIRYGNRGMTLEEDLNLTNQYYLEIGHAVIHKKPTPIQIVQVDYPARSAAVIKEA
YFKQPSTTDYNGVYKGRYIDFEAKETKNLHSFPLQNFHEHQIRHMMQVEQQKGISFVIIRFTTTDEVFLLPSQHLFRFWE
RMKNGGRKSIKKEEIENYGKTIPIKYQPRIDYLEVVDILYHSYF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=150508 BSM4216_RS09415 WP_048623542.1 2014989..2015603(+) (recU) [Bacillus smithii strain DSM 4216]
GTGGAGTTTCATTATCCAAATGGAAAAAAATACAATCCTTCTCAACAACAAATAGCGAAAAAAGGCCATTCAAAACCGAT
ACGATACGGCAATCGAGGAATGACTCTCGAAGAAGATCTCAATTTGACCAATCAGTATTATTTAGAAATTGGACATGCTG
TCATTCATAAAAAGCCGACACCTATTCAAATTGTTCAAGTAGATTATCCGGCAAGGAGTGCCGCTGTGATCAAAGAGGCT
TATTTCAAACAGCCATCCACTACAGACTATAACGGAGTATACAAGGGGAGATATATTGACTTTGAAGCCAAAGAAACGAA
AAACTTGCACTCTTTTCCACTGCAAAATTTTCACGAACATCAAATCCGCCACATGATGCAAGTGGAACAACAAAAAGGCA
TCTCCTTCGTTATTATCCGTTTCACCACAACGGATGAAGTGTTCTTGCTTCCGAGCCAACATCTTTTTCGATTTTGGGAA
CGGATGAAAAACGGGGGAAGGAAATCCATCAAAAAAGAAGAAATTGAAAATTATGGGAAAACTATTCCGATTAAGTATCA
ACCTCGCATTGATTATTTGGAAGTGGTAGACATTCTTTACCATTCTTATTTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

60.606

97.059

0.588

Multiple sequence alignment