Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSM4216_RS00195 Genome accession   NZ_CP012024
Coordinates   45073..45366 (-) Length   97 a.a.
NCBI ID   WP_003352328.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40073..50366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS00160 (BSM4216_0034) - 40107..40547 (+) 441 WP_048622323.1 YaaR family protein -
  BSM4216_RS00165 (BSM4216_0035) holB 40540..41574 (+) 1035 WP_048622324.1 DNA polymerase III subunit delta' -
  BSM4216_RS00170 (BSM4216_0036) - 41567..42394 (+) 828 WP_003352335.1 stage 0 sporulation family protein -
  BSM4216_RS00175 (BSM4216_0037) yabA 42409..42768 (+) 360 WP_003352334.1 DNA replication initiation control protein YabA -
  BSM4216_RS00180 (BSM4216_0038) - 43118..43858 (+) 741 WP_048622325.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BSM4216_RS00185 (BSM4216_0039) - 43842..44117 (+) 276 WP_048622326.1 GIY-YIG nuclease family protein -
  BSM4216_RS00190 (BSM4216_0040) rsmI 44107..44985 (+) 879 WP_048622327.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BSM4216_RS00195 (BSM4216_0041) abrB 45073..45366 (-) 294 WP_003352328.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BSM4216_RS00200 (BSM4216_0042) metG 46001..47950 (+) 1950 WP_048622328.1 methionine--tRNA ligase -
  BSM4216_RS00205 (BSM4216_0044) - 48393..49160 (+) 768 WP_048622329.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10752.57 Da        Isoelectric Point: 5.9024

>NTDB_id=150485 BSM4216_RS00195 WP_003352328.1 45073..45366(-) (abrB) [Bacillus smithii strain DSM 4216]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDDKIILKKYKPSMTCQITGEVSDDNVKLAGGKLILSREGAE
LLLKEIEEAFHLSAANK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=150485 BSM4216_RS00195 WP_003352328.1 45073..45366(-) (abrB) [Bacillus smithii strain DSM 4216]
ATGAAATCAACTGGCATTGTTCGTAAAGTTGATGAACTAGGCCGCGTGGTTATTCCTATAGAGCTTCGTCGTACATTAGG
CATTGCTGAAAAAGACGCTTTGGAAATTTATGTAGATGATGATAAGATTATTCTTAAAAAATATAAACCGAGCATGACCT
GCCAAATCACTGGAGAAGTTTCTGATGACAACGTAAAATTGGCAGGCGGAAAATTAATTTTAAGCCGTGAAGGCGCCGAA
TTGTTGTTAAAAGAAATCGAAGAAGCTTTTCACCTGTCCGCAGCGAATAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

83.516

93.814

0.784

Multiple sequence alignment