Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BSM4216_RS00020 Genome accession   NZ_CP012024
Coordinates   3312..4436 (+) Length   374 a.a.
NCBI ID   WP_048622314.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS00005 (BSM4216_0001) dnaA 1..1344 (+) 1344 WP_048622312.1 chromosomal replication initiator protein DnaA -
  BSM4216_RS00010 (BSM4216_0002) dnaN 1531..2673 (+) 1143 WP_048622313.1 DNA polymerase III subunit beta -
  BSM4216_RS00015 yaaA 3077..3295 (+) 219 WP_003353420.1 S4 domain-containing protein YaaA -
  BSM4216_RS00020 recF 3312..4436 (+) 1125 WP_048622314.1 DNA replication/repair protein RecF Machinery gene
  BSM4216_RS00025 - 4441..4698 (+) 258 WP_048622315.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  BSM4216_RS00030 (BSM4216_0004) gyrB 4978..6903 (+) 1926 WP_048624338.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 43233.40 Da        Isoelectric Point: 6.7462

>NTDB_id=150483 BSM4216_RS00020 WP_048622314.1 3312..4436(+) (recF) [Bacillus smithii strain DSM 4216]
MYMKELVLENFRNYESLQLTFDNKVNVILGENAQGKTNVLEAIYVLAMAKSHRTSNDKDLIRWDEEYAKIEGRVEKRHTS
IPLELTISKKGKKAKSNHIEQQRLSQYVGNLNVVMFAPEDLHLVKGSPQVRRRFIDMEIGQISPVYLHDISQYQKVLQQR
NHYLKQLQANKQHDKTMLEVLNEQLITLAVKIVQKRFEFIRLLEEWAQPIHSGISRGLEKLKIDYRPSIDVLEDDDWSKM
VEVFEEKISSQKEREIERGVTLIGPHRDELVFMVNGKNVHTFGSQGQQRTTALSVKLAEIELICSEIGEYPVLLLDDVLS
ELDDFRQSHLLNTIREKVQTFVTTTSTDGIHHQTLKEADTFHVMAGRVSKQDGG

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=150483 BSM4216_RS00020 WP_048622314.1 3312..4436(+) (recF) [Bacillus smithii strain DSM 4216]
ATGTACATGAAAGAGCTGGTATTGGAAAATTTTAGAAATTACGAATCTTTGCAATTAACTTTTGACAATAAGGTGAATGT
GATACTCGGGGAAAATGCCCAAGGAAAAACAAATGTACTCGAAGCGATTTATGTATTGGCGATGGCTAAATCCCATCGCA
CGTCAAACGATAAAGATTTGATTCGCTGGGATGAAGAGTATGCTAAAATAGAAGGTAGAGTGGAAAAACGGCATACCTCG
ATTCCATTAGAATTAACGATTTCAAAAAAAGGGAAAAAAGCGAAATCCAATCATATTGAGCAGCAAAGATTAAGTCAATA
TGTTGGAAATTTGAATGTCGTGATGTTTGCTCCTGAGGATCTTCATTTAGTCAAAGGAAGCCCGCAAGTTAGACGCCGTT
TTATTGATATGGAGATCGGACAAATCTCTCCTGTCTATTTACATGATATTAGTCAATATCAAAAAGTTTTACAGCAAAGA
AATCATTATTTAAAACAGCTGCAGGCTAATAAGCAGCACGACAAAACGATGCTGGAAGTTTTGAATGAACAGTTAATTAC
GTTAGCGGTAAAGATTGTTCAAAAACGTTTTGAGTTTATCCGGCTTTTAGAAGAATGGGCTCAGCCGATTCATTCCGGAA
TCTCCAGAGGACTTGAAAAATTAAAAATCGATTATCGTCCGTCTATCGATGTATTAGAAGATGACGATTGGTCAAAAATG
GTAGAAGTATTCGAAGAAAAAATTTCTTCTCAAAAGGAGCGGGAGATTGAGCGCGGGGTCACGTTGATAGGCCCTCACCG
GGATGAATTGGTTTTTATGGTGAATGGAAAAAACGTTCATACCTTTGGATCGCAAGGACAGCAAAGAACGACAGCTCTTT
CTGTAAAATTGGCGGAAATTGAGTTAATTTGCTCGGAAATCGGCGAATACCCTGTGCTGCTTTTGGATGACGTTTTATCG
GAATTGGATGATTTTAGACAGTCGCATTTGCTGAACACCATTCGCGAAAAAGTTCAGACATTTGTCACTACAACTAGTAC
AGACGGCATTCATCATCAAACGTTGAAAGAAGCAGATACTTTTCATGTGATGGCCGGCAGGGTGTCAAAACAAGATGGAG
GTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.838

98.93

0.671

Multiple sequence alignment