Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   lpt_RS03570 Genome accession   NZ_CP012019
Coordinates   761545..763752 (-) Length   735 a.a.
NCBI ID   WP_061784173.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Toronto-20052     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 756545..768752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lpt_RS03550 (lpt_03535) - 757052..758980 (-) 1929 WP_061784171.1 hypothetical protein -
  lpt_RS03555 (lpt_03540) - 759105..759497 (-) 393 WP_010946360.1 hypothetical protein -
  lpt_RS03560 (lpt_03545) - 759634..760011 (+) 378 WP_014841112.1 hypothetical protein -
  lpt_RS03565 (lpt_03550) - 760212..761519 (+) 1308 WP_061784172.1 tetratricopeptide repeat protein -
  lpt_RS03570 (lpt_03555) comEC 761545..763752 (-) 2208 WP_061784173.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  lpt_RS03575 (lpt_03560) pilE 763830..764279 (-) 450 WP_072356079.1 type IV pilin protein Machinery gene
  lpt_RS03580 (lpt_03565) - 764291..767800 (-) 3510 WP_061784174.1 pilus assembly protein -
  lpt_RS03585 (lpt_03570) - 767813..768325 (-) 513 WP_061784175.1 pilus assembly protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 83103.73 Da        Isoelectric Point: 9.8039

>NTDB_id=150374 lpt_RS03570 WP_061784173.1 761545..763752(-) (comEC) [Legionella pneumophila subsp. pneumophila strain Toronto-20052]
MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGCGFALIHQWIVSPKGMPDTQVITQAQLEGTIASIPMQ
RPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRWQLSVKLKKPRNFHNPGGFNYVRYLAARHIHWTGYIRYGNN
KLISNQPSSFSWLALREKIGDALTKLAPDTETAGIIEALTLNVTHHISSDHWNLFRRTGTIHLFGISGEHIALVSGIFFI
VMRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIE
PHAAFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL
MTMITSPFHWSWILMKPLAWLVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL
FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKTIDKIVISHPDKDHKGG
LNSLEKEMKVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEE
YLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAGIKL
PASGKINKPTCMQAV

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=150374 lpt_RS03570 WP_061784173.1 761545..763752(-) (comEC) [Legionella pneumophila subsp. pneumophila strain Toronto-20052]
ATGGAAATTTTTTGCTTTTTAATAGGCGTACTTTATGCTTATACCTATAATATTTATCTAACTATTGCGATTCCTTTACT
CTTTTATATCACACCAAGATATCCAATTGTCCTGTTCTTCATCGCCGGATGTGGCTTTGCCCTGATTCATCAGTGGATTG
TATCTCCCAAGGGCATGCCTGATACGCAAGTAATCACACAAGCCCAATTGGAAGGAACAATTGCTTCCATCCCCATGCAA
CGTCCTAACAAAACCCAATTCCATTTTGCAATTGAAAAAATTAATAATAACCCTGCTCAAGGCTTGATCCAATTAAACTG
GTATAACAAACCACCTGTCTTACGAGCTGGTCAGCGATGGCAACTTTCAGTGAAACTAAAAAAACCTCGTAACTTCCACA
ACCCGGGAGGTTTTAATTATGTACGTTACCTGGCGGCTCGTCATATCCATTGGACTGGCTATATTCGTTATGGGAATAAT
AAGCTAATTAGCAATCAACCCTCTTCTTTCAGTTGGTTAGCACTACGTGAAAAAATAGGGGATGCTTTGACAAAACTGGC
ACCGGATACAGAAACGGCAGGCATCATCGAAGCATTGACGTTAAATGTTACTCACCATATCAGTTCAGATCATTGGAATT
TGTTCCGAAGAACAGGAACGATACATTTATTCGGGATTTCAGGAGAGCACATCGCTCTGGTCTCCGGCATTTTCTTTATA
GTAATGAGATGGATTTGGTCAATAAATTATCGATGCTGTTTGTTCTTACCGGCCAATACCATAGCGAGTATCGGTGGGCT
ACTGGCCGCCTTGCCCTATGCTTTTTTAGCTGGGTTTGAGCCTCCTGTACAACGTGCTTTAATTGGTTGTGTACTTTACA
CAATATACGCCATAGGAAAACAACGTTTTACACCATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGTATTGAG
CCCCATGCCGCATTCCTGCAAGGTTTTTATTTTTCATTTCTTGCCGTGGCCTGTCTTCTATTGACTCATCAACGCTGGCC
ACTGAAAAATTATAAAAAAACACTGGCATTACAATTAAGTTGCCTCATTGGATTGATGCCTTTGACTCTCCATTGGTACT
CCTATGGTTCTATCAATGGATTTCTTGCCAATTTATTCGCCATACCTTTAGTCAGTTTTCTGATAGTACCCTTGGCTTTA
ATGACCATGATAACGAGTCCATTTCATTGGTCCTGGATATTGATGAAACCATTGGCGTGGCTTGTTGCCCTGTTACTGCA
AGGACTAACGTATGTTGAGCAAATAGCAGGGATCAATATCACCTGGTCCATCACCTCGGTAACAATGATGCTCGCTATGA
CAGCAGGTCTGTTTTTAAGGGTATTATTACCTGTCAAGCCATTCAAACACTTGGCTATCCTTTGGATTATCCTTCCCTTA
TTTCCACCTCGTACTGCAATTTATCCAGGGGAAGCATTAATTAATATTTTGGATGTTGGGCAAGGACTTGCCGTTGCGAT
ACAAACGCAACATCATGTTTTACTCTACGACACAGGAGATTCCTACTTTCAAGGGAGTGATTTAGGGCAAATGGCGATAA
TCCCCTTTTTCAGGTCAATTGGAATAAAAACAATTGACAAAATAGTAATAAGCCATCCCGATAAAGATCATAAAGGCGGA
TTAAATTCCCTTGAAAAAGAGATGAAAGTCAATCAATTAATAGTGAATGATCCCTATTTTTATAAACGTGGAAGTAATTG
TCATTCATACCCGCAATGGCAATGGGATGGTGTGAGTTTTCGTTTTTTACCCATCAGGGAATCTTTCAATAAAAAAAATA
ATAATTCTTGTATCTTACAGGTAAGTAATTCGGCTGGCAGGGTTTTGTTAACGGGAGATATTGAAAAAGCAGCTGAGGAG
TACCTGGTAAGAAACTACGGCAGTCAGCTGGCATCCGAAATTTTAGTTGTGCCTCATCATGGGAGCAAAACGTCTTCATC
CTATCGATTTTTGCTGGAAGTAAACCCGCTTTATGCCATTGCATCCTTAGGATTTGATAATCGCTTCAAATTTCCACATT
CTAAAACTTTGCAAAGTATGAAAACATTAGGTATCACTTTTTTTAGAACAGACGAATGCGGAATGGCAGGAATCAAACTA
CCTGCGTCAGGTAAAATTAACAAACCAACCTGTATGCAGGCTGTATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-578)

Domain of unknown function (DUF4131) (DUF4131)

(21-158)

Competence protein (Competence)

(199-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

99.32

100

0.993
  comEC Legionella pneumophila strain ERS1305867

96.73

99.864

0.966

Multiple sequence alignment